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Sample GSM359290 Query DataSets for GSM359290
Status Public on Dec 01, 2009
Title H3K27me3 Yaswen1C RenLab ENCODE PCR tiling array replicate 1 llee_enc_H3K27me3_Yaswen1C_050808.gpr
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA from Yaswen1C cells using H3K27me3 antibody
Organism Homo sapiens
Characteristics Chromatin immunoprecipitated DNA from Yaswen1C cells using H3K27me3 antibody
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy5
Label protocol Cy3 input Cy5 ChIP sample
 
Channel 2
Source name Input DNA from Yaswen1C cells
Organism Homo sapiens
Characteristics Input DNA from Yaswen1C cells
Extracted molecule genomic DNA
Extraction protocol GenePix
Label Cy3
Label protocol Cy3 input Cy5 ChIP sample
 
 
Hybridization protocol GenePix
Scan protocol GenePix
Description ChIP-chip analyses were performed for various transcription factors and chromatin modifications in various cell types. Details to be described in publications.
Data processing raw data
 
Submission date Jan 09, 2009
Last update date Feb 19, 2009
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name University of California, San Diego
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE14436 P16INK4a mediated supperssion of telomerase in normal and malignant human breast cells

Data table header descriptions
ID_REF ID_REF
VALUE log2 ratio (F635/F532) with flagged values removed
STATISTICS statistics
PVAL p-value
F635_INT F635 intensity with background intensity subtracted (normalized)
F532_INT F532 intensity with background intensity subtracted (normalized)
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
UNF_VALUE log ratio (F635/F532)

Data table
ID_REF VALUE STATISTICS PVAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG UNF_VALUE
1 -0.035 1.06 4.110e-01 608.00 572.26 672 700 327 64 78 66 1315 1320 323 692 703 173 0 -0.035
2 0.199 1.25 2.048e-01 550.00 439.99 613 596 241 63 78 67 1172 1201 291 693 701 180 0 0.199
3 1.09 4.877e-01 10.00 9.19 57 74 78 65 77 64 681 698 165 707 715 184 -50 -1.700
4 1.09 4.889e-01 10.00 9.19 71 82 65 63 75 62 685 708 192 704 710 181 -50 0
5 0.030 1.11 3.433e-01 874.00 786.29 937 960 395 63 74 63 1534 1521 362 678 692 172 0 0.030
6 0.120 1.18 2.537e-01 1685.00 1424.69 1751 1803 502 66 78 66 2249 2269 406 698 706 170 0 0.120
7 0.169 1.22 2.144e-01 1719.00 1404.48 1778 1727 584 59 76 65 2205 2198 418 676 686 167 0 0.169
8 0.074 1.15 2.978e-01 1306.00 1139.94 1370 1406 471 64 75 62 1925 1915 409 684 691 175 0 0.074
9 0.140 1.20 2.364e-01 1329.00 1107.79 1394 1407 393 65 79 65 1900 1919 332 694 698 171 0 0.140
10 0.448 1.48 6.650e-02 2248.00 1513.79 2312 2189 758 64 75 60 2339 2260 596 691 698 169 0 0.448
11 0.294 1.33 1.316e-01 1406.00 1053.59 1468 1452 446 62 74 62 1830 1804 370 683 698 180 0 0.294
12 -0.066 1.04 4.393e-01 837.00 804.66 901 933 329 64 73 60 1569 1566 333 693 695 173 0 -0.066
13 0.218 1.27 1.844e-01 985.00 778.02 1049 1059 400 64 75 64 1532 1492 357 685 688 172 0 0.218
14 -0.171 0.97 5.533e-01 1487.00 1537.67 1552 1536 389 65 78 68 2364 2385 394 690 693 172 0 -0.171
15 0.169 1.22 2.174e-01 916.00 748.63 979 1017 304 63 77 66 1503 1518 325 688 693 175 0 0.169
16 0.725 1.80 1.367e-02 2415.00 1342.02 2479 2485 499 64 77 67 2141 2133 387 680 687 174 0 0.725
17 -0.329 0.87 7.149e-01 1002.00 1156.47 1065 1076 284 63 74 62 1950 1963 340 691 699 174 0 -0.329
18 -0.104 1.01 4.801e-01 1651.00 1630.45 1716 1724 493 65 79 67 2463 2475 410 688 692 175 0 -0.104
19 1.09 4.882e-01 10.00 9.19 62 76 65 65 78 64 710 721 179 706 709 180 -50 0
20 0.836 1.94 6.796e-03 5602.00 2883.37 5665 5582 993 63 75 64 3839 3811 565 700 707 177 0 0.836

Total number of rows: 25246

Table truncated, full table size 2413 Kbytes.




Supplementary file Size Download File type/resource
GSM359290.gpr.gz 2.5 Mb (ftp)(http) GPR
Processed data included within Sample table
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