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Sample GSM352554 Query DataSets for GSM352554
Status Public on Jan 01, 2009
Title V-M10 Monarch Butterfly Fall Vehicle Treated Male 10
Sample type RNA
 
Source name Fall Vehicle Treated Male
Organism Danaus plexippus
Characteristics dissected brain
Wild caught 10/30/07
Treatment protocol 14 days Light/Dark cycle
Lights on: 7:00 AM
Lights off: 6:00 PM
Temperature (light): 23 oC
Temperature (dark): 12 oC
topical treatment of vehicle (acetone) on day 1 and day 3
Extracted molecule total RNA
Extraction protocol Extracted using Qiagen RNeasy Mini kit
Amplified using Nugen Ovation kit
Label CY3
Label protocol Nimblegen commercial protocol
 
Hybridization protocol Nimblegen commercial protocol
Scan protocol Nimblegen commercial protocol
Description Nimblegen commercial protocol is located at http://www.nimblegen.com/products/lit/exp_userguide_2008_05_21.pdf
Data processing Nimblegen commercial protocol
 
Submission date Dec 18, 2008
Last update date Dec 23, 2008
Contact name Steven Reppert
E-mail(s) steven.reppert@umassmed.edu
Phone 508-856-6148
Fax 508-856-6266
Organization name University of Massachusetts Medical School
Department Neurobiology
Street address 364 Plantation St
City Worcester
State/province MA
ZIP/Postal code 01605
Country USA
 
Platform ID GPL7829
Series (1)
GSE14041 Defining Behavioral and Molecular Differences Between Summer and Migratory Monarch Butterflies

Data table header descriptions
ID_REF
VALUE Nimblegen normalized value

Data table
ID_REF VALUE
BF01001X1A03_f1P00005 197.13
BF01001X1A03_f1P00084 228.97
BF01001X1A03_f1P00127 76.45
BF01001X1A03_f1P00130 111.62
BF01001X1A03_f1P00136 124.9
BF01001X1A03_f1P00141 90.68
BF01001X1A03_f1P00144 114.97
BF01001X1A04_f1P00205 24.9
BF01001X1A04_f1P00323 21.76
BF01001X1A04_f1P00327 66.2
BF01001X1A04_f1P00329 39.98
BF01001X1A04_f1P00331 18.74
BF01001X1A04_f1P00333 20.93
BF01001X1A04_f1P00422 20.78
BF01001X1A05_f1P00002 1119.74
BF01001X1A05_f1P00071 5612.59
BF01001X1A05_f1P00568 27031.13
BF01001X1A05_f1P00674 19938.65
BF01001X1A05_f1P00684 21214.84
BF01001X1A05_f1P00696 15702.76

Total number of rows: 65788

Table truncated, full table size 2075 Kbytes.




Supplementary file Size Download File type/resource
GSM352554_10604802_532_pair.txt.gz 1.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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