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Sample GSM351703 Query DataSets for GSM351703
Status Public on Jan 28, 2009
Title Sox2 IP from iPS cells
Sample type genomic
 
Channel 1
Source name iPS cells - Sox2 IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for Sox2
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name iPS cells - no IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 16, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -0.092385756 0.458142597 -0.177755786 0.517043987
2 -0.362146414 0.664167277 0.054937401 0.48710222
3 0.587143817 0.211112587 0.341896483 0.324251851
4 0.532117784 0.227895762 0.679637906 0.183789538
5 0.364212069 0.311484963 0.351612981 0.345358605
6 -0.12651789 0.549805736 0.102947492 0.408241456
7 -0.017138953 0.390457184 -0.058495183 0.48158801
8 0.329059939 0.314177825 0.237539614 0.363029101
9 0.174639599 0.38911549 0.337895399 0.3112512
10 0.236471909 0.358606909 0.410388689 0.277399073
11 0.481468134 0.232948287 0.313113221 0.261455757
12 -0.039375574 0.39125982 0.274551783 0.264558007
13 0.142436321 0.307245157 0.038599032 0.390863642
14 -0.024588266 0.504884217 0.131502502 0.324427785
15 0.158217681 0.311181843 0.09380783 0.324928188
16 0.058148301 0.288988811 0.262759499 0.21319237
17 0.337233515 0.228194733 0.379403021 0.277434574
18 0.426184133 0.212454377 0.905069773 0.091833978
19 1.202336682 0.044725701 1.017214596 0.051431965
20 0.58559221 0.139687409 1.041270523 0.059782475

Total number of rows: 473073

Table truncated, full table size 25597 Kbytes.




Supplementary file Size Download File type/resource
GSM351703_Sox2-iPS1.tsv.gz 54.6 Mb (ftp)(http) TSV
GSM351703_Sox2-iPS2.tsv.gz 54.4 Mb (ftp)(http) TSV
GSM351703_Sox2-iPS3.tsv.gz 53.5 Mb (ftp)(http) TSV
GSM351703_Sox2-iPS4.tsv.gz 55.3 Mb (ftp)(http) TSV
Processed data included within Sample table

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