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Sample GSM351702 Query DataSets for GSM351702
Status Public on Jan 28, 2009
Title Sox2 IP from ES cells
Sample type genomic
 
Channel 1
Source name ES cells - Sox2 IP
Organism Mus musculus
Characteristics Cultured ES cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for Sox2
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name ES cells - no IP
Organism Mus musculus
Characteristics Cultured ES cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 16, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -1.255818174 0.856528168 -0.376949096 0.665541496
2 -0.019072248 0.512978567 -0.430104592 0.683273399
3 0.338970047 0.405715768 0.124481569 0.483439468
4 -0.039306807 0.538522206 -0.04840974 0.551442177
5 -0.3985908 0.661074451 -0.380505023 0.66569611
6 -0.389338908 0.659246225 -0.207275836 0.608506348
7 0.340697483 0.392918971 -0.040946303 0.546910061
8 -0.137396591 0.55449284 0.283953551 0.397452003
9 0.801863651 0.216841244 0.346209955 0.30543214
10 0.103720264 0.33061651 0.723538375 0.227282961
11 0.689616975 0.291575586 0.396321466 0.358419478
12 0.08390478 0.494423584 0.066250291 0.507839462
13 -0.620742955 0.719481902 -0.013064637 0.515521459
14 0.516232432 0.307384311 -0.035928059 0.439206665
15 0.034679697 0.346631548 0.581481871 0.262874978
16 0.732854496 0.276554425 0.620963215 0.288008481
17 0.602236729 0.318784881 0.991807479 0.187492316
18 0.847763633 0.155717182 1.487360784 0.092625262
19 1.819323414 0.059751904 1.511385555 0.085012899
20 0.655130526 0.297601327 1.356710814 0.117711916

Total number of rows: 473062

Table truncated, full table size 25578 Kbytes.




Supplementary file Size Download File type/resource
GSM351702_Sox2-ES1.tsv.gz 55.9 Mb (ftp)(http) TSV
GSM351702_Sox2-ES2.tsv.gz 55.7 Mb (ftp)(http) TSV
Processed data included within Sample table

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