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Sample GSM351701 Query DataSets for GSM351701
Status Public on Jan 28, 2009
Title Oct4 IP from iPS cells
Sample type genomic
 
Channel 1
Source name iPS cells - Oct4 IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for Oct4
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name iPS cells - no IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 16, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -0.168884481 0.472416255 -0.295263097 0.604574965
2 -0.35512852 0.656910757 0.014200792 0.476993929
3 0.585717316 0.2532007 0.26297885 0.379168411
4 0.396651971 0.288248507 0.457285954 0.291386324
5 0.090587314 0.458692883 0.024122643 0.478194423
6 -0.403935346 0.67954868 -0.08792428 0.540609522
7 0.137503294 0.437228583 -0.123817112 0.557966426
8 -0.210769025 0.580072648 -0.158529441 0.56725325
9 -0.140871824 0.561787671 -0.02373052 0.50440066
10 0.314393849 0.365539924 0.374816249 0.335464845
11 0.698682537 0.213180827 0.409548896 0.298480287
12 -0.067112483 0.436538227 0.17486426 0.394431673
13 -0.220374473 0.602243346 -0.272658921 0.605618886
14 -0.318836958 0.64281686 -0.20295052 0.587546919
15 0.102146596 0.436527885 -0.428133174 0.687540722
16 -0.73792871 0.768766001 -0.508599015 0.714639516
17 -0.505225056 0.709200134 -0.250603717 0.614479961
18 0.693671768 0.176046464 0.843810682 0.170319308
19 1.764055887 0.023057398 1.059370031 0.109673121
20 -0.009782907 0.50159608 1.087205691 0.109267186

Total number of rows: 473436

Table truncated, full table size 25624 Kbytes.




Supplementary file Size Download File type/resource
GSM351701_Oct4-iPS1.tsv.gz 55.0 Mb (ftp)(http) TSV
GSM351701_Oct4-iPS2.tsv.gz 54.6 Mb (ftp)(http) TSV
Processed data included within Sample table

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