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Sample GSM351335 Query DataSets for GSM351335
Status Public on Jan 28, 2009
Title Klf4 IP from partial iPS cells
Sample type genomic
 
Channel 1
Source name partial iPS cells - Klf4 IP
Organism Mus musculus
Characteristics Cultured partial iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for Klf4
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name partial iPS cells - no IP
Organism Mus musculus
Characteristics Cultured partial iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 15, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 -0.204936805 0.464923458 -0.229834107 0.460788071
2 -0.453723048 0.613657248 0.261545405 0.352616349
3 1.129716289 0.161953811 1.076615572 0.16966421
4 1.573855239 0.084953303 2.054334411 0.040071071
5 1.671659385 0.068696 1.939181199 0.049291152
6 0.904105999 0.210888837 1.611371878 0.084921868
7 0.868348687 0.219711998 0.825576911 0.239716617
8 -0.072085668 0.518530355 -0.225990633 0.572922921
9 -0.392556019 0.631322515 -0.385222531 0.618541919
10 -0.367615052 0.61393928 -0.231226071 0.575702461
11 0.298372246 0.368276618 0.153707666 0.425488376
12 0.476042991 0.280859705 0.18610121 0.424889992
13 -0.315719811 0.570051874 0.208634583 0.426811282
14 0.318265123 0.388596559 0.027704403 0.469680465
15 0.021039812 0.477567116 0.300382045 0.394839759
16 0.296467534 0.396421108 0.089103138 0.460425411
17 -0.143399012 0.544538571 -0.018736442 0.504553506
18 -0.166963945 0.54453102 0.772786856 0.252947479
19 1.953009641 0.04379061 1.405948617 0.115413923
20 1.220920899 0.140276646 1.600143192 0.086413481

Total number of rows: 472439

Table truncated, full table size 25556 Kbytes.




Supplementary file Size Download File type/resource
GSM351335_Klf4-piPS1.tsv.gz 54.7 Mb (ftp)(http) TSV
GSM351335_Klf4-piPS2.tsv.gz 54.2 Mb (ftp)(http) TSV
Processed data included within Sample table

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