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Sample GSM351023 Query DataSets for GSM351023
Status Public on Jan 28, 2009
Title c-Myc IP from iPS cells
Sample type genomic
 
Channel 1
Source name iPS cells - c-Myc IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and an IP was performed for c-Myc
Label Cy5
Label protocol Labeling done according to manufacturer's protocol
 
Channel 2
Source name iPS cells - no IP
Organism Mus musculus
Characteristics Cultured iPS cells
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using standard procedures and no IP was performed
Label Cy3
Label protocol Labeling done according to manufacturer's protocol
 
 
Hybridization protocol Hybridization done according to manufacturer's protocol
Scan protocol Scanning was performed with manufacturer's protocol
Description none
Data processing Data analysis was performed using the Agilent Chip-Analytics software v1.3
 
Submission date Dec 13, 2008
Last update date Jan 28, 2009
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL7793
Series (1)
GSE14012 Role of the reprogramming factors in inducing pluripotency

Data table header descriptions
ID_REF
VALUE Difference between IP/WCE ratio divided by the Agilent error model
AvePX Pvalue of VALUE
Xbaraves Neighboring probe calculation
AvePXbar Pvalue of Xbaraves

Data table
ID_REF VALUE AvePX Xbaraves AvePXbar
1 0.629571782 0.205305843 -0.255868878 0.535945133
2 -0.579250464 0.725054866 -0.147202834 0.558041101
3 -0.319945319 0.484309046 -0.443227474 0.65856583
4 -0.098556624 0.54191224 -0.08020402 0.476133335
5 0.172102464 0.384464597 -0.295769744 0.608089324
6 -0.73161609 0.771255416 -0.544399279 0.697967779
7 -0.657480942 0.751701213 -0.635054375 0.739454319
8 -0.605151695 0.730106993 -0.435983789 0.664131212
9 -0.365850063 0.626735839 -0.39927968 0.639782207
10 0.066621994 0.448849179 -0.333640771 0.583422795
11 -0.501088838 0.624249043 -0.442834862 0.612082162
12 -0.621421744 0.697126704 -0.90316972 0.811141747
13 -0.891342406 0.801934808 -0.807503125 0.790958394
14 -0.265967359 0.582324738 -0.665679276 0.722986958
15 -0.205070335 0.515319103 -0.476907317 0.680660867
16 -0.515960421 0.699876849 -0.863187571 0.771057626
17 -1.064051499 0.851069 -1.060851809 0.820937114
18 -0.641223576 0.667576987 -0.311815026 0.606753433
19 1.115955655 0.109389342 0.168952732 0.429762286
20 -0.031046206 0.512231378 0.167208494 0.430560484

Total number of rows: 472855

Table truncated, full table size 25592 Kbytes.




Supplementary file Size Download File type/resource
GSM351023_cMyc-iPS1.tsv.gz 54.6 Mb (ftp)(http) TSV
GSM351023_cMyc-iPS2.tsv.gz 53.4 Mb (ftp)(http) TSV
GSM351023_cMyc-iPS3.tsv.gz 55.3 Mb (ftp)(http) TSV
Processed data included within Sample table

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