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Sample GSM3466988 Query DataSets for GSM3466988
Status Public on Dec 31, 2019
Title primary bovine uninucleate trophoblast cells from cow 4
Sample type RNA
Source name primary bovine uninucleate trophoblast cells
Organism Bos taurus
Characteristics cell type: primary bovine uninucleate trophoblast cells
Treatment protocol Primary UTC and TGC isolates were analyzed without further treatment.
Extracted molecule total RNA
Extraction protocol Total RNA was prepared using the NucleoSpin RNA Kit including removal of genomic DNA with RNAse free rDNAse (Macherey-Nagel).
Label Biotin
Label protocol RNA from each cell sample was used to generate single strand DNA (Ambion WT Expression Kit). Fragmentation and labeling was performed with the Affymetrix Gene Chip WT Terminal Labeling and Hybridization Kit
Hybridization protocol The RNA was hybridized overnight (45°C) in the GeneChipR Hybridization Oven (Affymetrix) to the Affymetrix Bovine Gene 1.0 ST arrays. Washing and staining were performed according to the Affymetrix standard protocol.
Scan protocol The scanning of the microarray was done with the GeneChip Scanner 3000 7G (Affymetrix) and image processing was done with the software AGCC (Affymetrix).
Data processing Raw data were processed with the Expression Console (V1.4.1.46; Affymetrix), where normalization, background reduction and a gene-level summary was done using the RMA method (Robust Multichip Average).
Submission date Nov 13, 2018
Last update date Jan 24, 2020
Contact name Rainer Fuerbass
Organization name Leibniz Institute for Farm Animal Biology
Street address Wilhelm-Stahl-Allee
City Dummerstorf
ZIP/Postal code 18196
Country Germany
Platform ID GPL16500
Series (1)
GSE122474 Transcriptome analysis of bovine uninucleated trophoblast cells (UTC) and Trophoblast Giant Cells (TGC)

Data table header descriptions
VALUE log2 RMA signal

Data table
12678162 2.015402
12678166 2.94944
12678175 1.860876
12678178 3.512975
12678183 3.725161
12678186 3.631791
12678189 6.096365
12678219 1.895791
12678223 3.493726
12678232 4.266745
12678235 4.291667
12678240 3.57331
12678244 7.588265
12678246 5.734112
12678251 3.428895
12678254 4.311251
12678266 3.21126
12678271 2.554393
12678279 5.384379
12678281 5.572682

Total number of rows: 26773

Table truncated, full table size 467 Kbytes.

Supplementary file Size Download File type/resource
GSM3466988_F_4UTC.CEL.gz 4.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table
Processed data are available on Series record

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