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Sample GSM333966 Query DataSets for GSM333966
Status Public on Oct 18, 2008
Title Right un-irradiated_2
Sample type RNA
 
Channel 1
Source name RIGHT STRIATUM control_Replication1
Organism Rattus norvegicus
Characteristics control, untreated
Treatment protocol Rat striatum at 16 h, control
Growth protocol Adult male Wistar rats
Extracted molecule total RNA
Extraction protocol TRIZOL Reagent method
Label Cy5
Label protocol Standard Protocol of Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
Channel 2
Source name RIGHT STRIATUM un-irradiated_Replication1
Organism Rattus norvegicus
Characteristics Un-irradiated
Treatment protocol Rat striatum at 16 h post-irradiation, un-irradiated
Growth protocol Adult male Wistar rats
Extracted molecule total RNA
Extraction protocol TRIZOL Reagent method
Label Cy3
Label protocol Standard Protocol of Agilent Low RNA Input Fluorescent Linear Amplification Kit
 
 
Hybridization protocol Standard protocol of Gene Expression Hybridization Kit from Agilent Technologies
Scan protocol Standard protocol of Agilent DNA Microarray Scanner
Description Keyword = rat
Keyword = irradiation
Data processing Feature Extraction software Version 8.1 from Agilent Technologies
 
Submission date Oct 16, 2008
Last update date Oct 17, 2008
Contact name Randeep Rakwal
E-mail(s) rakwal-68@aist.go.jp
Fax +81 29 861 6066
Organization name AIST
Lab MST, HTRC lab
Street address AIST WEST, Onagawa 16-1
City Tsukuba
State/province Ibaraki
ZIP/Postal code 305-8569
Country Japan
 
Platform ID GPL2877
Series (1)
GSE13220 Transcriptomics of Rat Striata 16 h after Gamma Knife Surgery: Distinct Bilateral Effects in the Un-irradiated Striatum

Data table header descriptions
ID_REF
VALUE Log10 ( Norm_CH2 / Norm_CH1)
Norm_CH1 Normalised Intensity of Raw_CH1
Norm_CH2 Normalised Intensity of Raw_CH2
RAW_CH1 Background subtracted Intensity of CH1
RAW_CH2 Background subtracted Intensity of CH2

Data table
ID_REF VALUE Norm_CH1 Norm_CH2 RAW_CH1 RAW_CH2
1 -2.01284601 2.07E+04 2.01E+02 1186.27 42.0026
2 0.901614951 1.62E+01 1.29E+02 -5.50737 -4.06245
3 0.069884954 5.73E+02 6.73E+02 35.0661 131.175
4 0.470412249 5.08E+01 1.50E+02 4.30788 21.1291
5 0.01713311 1.40E+03 1.45E+03 80.6999 300.401
6 -0.01735169 1.38E+03 1.32E+03 79.7319 272.991
7 -2.164450129 1.85E+04 1.27E+02 1063.98 26.1977
8 0.744228928 2.43E+01 1.35E+02 0.101469 12.6069
9 0.002240958 1.04E+02 1.04E+02 8.51341 15.1795
10 -0.059105307 2.88E+03 2.52E+03 164.252 526.654
11 -0.672664889 1.84E+03 3.91E+02 109.59 78.4018
12 -0.755558828 1.50E+03 2.63E+02 91.6906 51.3916
14 -1.790063524 1.98E+04 3.22E+02 1131.61 67.3102
15 -0.299581911 2.39E+03 1.20E+03 137.24 249.088
16 -0.022460209 5.71E+03 5.43E+03 322.83 1145.72
17 -0.095420088 1.34E+03 1.07E+03 77.7435 219.922
18 -0.101333751 1.39E+03 1.10E+03 80.737 226.035
19 -0.370801831 5.86E+02 2.50E+02 38.0525 45.9067
20 -0.605242131 3.66E+02 9.07E+01 27.0181 14.6397
21 -2.098132688 1.89E+04 1.51E+02 1084.75 31.3019

Total number of rows: 43628

Table truncated, full table size 2212 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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