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Sample GSM326355 Query DataSets for GSM326355
Status Public on Aug 01, 2011
Title Genotype 8×5 grown at 15°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 8X5, 15°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 8X5-15
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019040
BioSample SAMN00011144

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
ATAGGAGAAGTTACGC 158719
ACCATAGAGACTTGTT 49118
AAAAAAAAAAAAAAAA 46509
TAGGTTTTCTATTTCT 36195
GTCGTAGTGGAAAAGT 33763
ATTTTTGATTTTGAAA 32508
TGTTATAAACCAGAAT 29271
AGAACTTCACTGTGTT 24325
ACAATCTTGAGCGAAT 19991
AATTGATGATAGCAGC 19708
TGGCTGCCCTTGAGAA 19589
GAGAGTTACGGATTTC 18521
TTTTTTTGTTCCTCGA 18475
CATCGCCTCCATAGAC 18349
GATTTAGCATTGTGAA 17706
TGTTATAACCAGAATA 17550
TGGACGATAGAAAGAA 16412
CCCTGCAGTGGCAGCC 16128
ATTGTTGTATCAATCC 16067
ATAGGATATGCCAGGA 15425

Total number of rows: 289356

Table truncated, full table size 5408 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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