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Sample GSM326354 Query DataSets for GSM326354
Status Public on Aug 01, 2011
Title Genotype 8×5 grown at 20°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 8X5, 20°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 8X5-20
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019039
BioSample SAMN00011143

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
AAAAAAAAAAAAAAAA 51362
TGGCTGCCCTTGAGAA 42415
CCCTGCAGTGGCAGCC 34940
ATTTTTGATTTTGAAA 26336
ATAGGAGAAGTTACGC 25436
AACATTGTGTGGACGG 25412
CGCCGACACTGGGGAG 19971
ACCATAGAGACTTGTT 19141
CGACGCGACTACCTGC 17998
ACCCGTCTGAGGAGGG 17823
CCACCGAGGCCGCCTG 16519
TTTGGGAGAGGGCGTA 16422
GTCGTAGTGGAAAAGT 16239
TGCACAGTCCCTCCGA 15676
TATTGGCCTCTGGCCC 15413
AACAGTCTTAACGGTT 15317
TTTTTTTGTTCCTCGA 14364
CGTGTCTGGCAGGTTT 12948
GGCCATTACCTTGGGG 12700
TTCGCCGGTAAACAGC 12142

Total number of rows: 220722

Table truncated, full table size 4124 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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