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Sample GSM326353 Query DataSets for GSM326353
Status Public on Aug 01, 2011
Title Genotype 8×5 grown at 25°C
Sample type SRA
 
Source name larvae
Organism Magallana gigas
Characteristics Genotype 8X5, 25°C
Growth protocol Animals were grown in seawater and fed ad-libitum
Extracted molecule total RNA
Extraction protocol Animals homogenized in RNA extraction buffer, RNA extracted with Qiagen Rneasy Kit
Digital Gene Expression: poly-A selected, DpnII digest and sequenced on Illumina Genome Analyzer according to manufacturer's instructions
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina Genome Analyzer
 
Description 8X5-25
Data processing identical tags were condensed into a set of unique tags and a count equivalent to the number of times a tag was observed was assigned to each unique tag. Counts were analyzed using a linear model.
 
Submission date Oct 02, 2008
Last update date May 15, 2019
Contact name Jason Curole
E-mail(s) jcurole@gmail.com
Organization name University of Southern California
Department Biological Sciences
Street address 3616 Trousdale Pkwy.
City Los Angeles
State/province CA
ZIP/Postal code 90089
Country USA
 
Platform ID GPL9389
Series (1)
GSE13028 Response to temperature increase is genotype-dependent: A genomic analysis of marine larvae
Relations
SRA SRX019038
BioSample SAMN00011142

Data table header descriptions
SEQUENCE
COUNT count

Data table
SEQUENCE COUNT
ATAGGAGAAGTTACGC 73480
AAAAAAAAAAAAAAAA 43911
CCCTGCAGTGGCAGCC 29973
TAGGTTTTCTATTTCT 23155
TTTTTTTGTTCCTCGA 19977
TTTGGGAGAGGGCGTA 19697
TGGCTGCCCTTGAGAA 19454
AACATTGTGTGGACGG 18646
ACCATAGAGACTTGTT 18211
GTCGTAGTGGAAAAGT 17142
CGACGCGACTACCTGC 17128
ATTTTTGATTTTGAAA 16929
GCAAGAGGATTCTGGA 15541
CCTTGTCTGTCCAACA 14231
GAGAGTTACGGATTTC 13735
CAACAAGAAAACAAGA 13356
CTTTTTTGTTCCTCGA 13307
ATTGTTGTATCAATCC 12846
ACAATCTTGAGCGAAT 12395
AGAACTTCACTGTGTT 12389

Total number of rows: 164020

Table truncated, full table size 3066 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data included within Sample table

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