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GEO accession:
Sample GSM325305
Query DataSets for GSM325305
Status
Public on Apr 16, 2009
Title
Esophagus
Sample type
RNA
Source name
Esophagus tissue of frog
Organism
Xenopus tropicalis
Characteristics
Esophagus
Extracted molecule
polyA RNA
Extraction protocol
mRNA extraction and cDNA synthesis were done as described by Zhang et al., 2004 (PMID: 15588312)
Label
Cy5 or Cy3
Label protocol
cDNA labelling procedures were done as described by Zhang et al., 2004 (PMID: 15588312)
Hybridization protocol
Hybridizations were carried out as described by Zhang et al., 2004 (PMID: 15588312)
Scan protocol
Arrays were scanned on an Axon 4000A scanner and images quatified using GenePix
Description
Esophagus tissue of frog
Data processing
Data was processed as described by Zhang et al., 2004 (PMID: 15588312) and dye-swapped replicates were averaged.
Submission date
Sep 29, 2008
Last update date
Apr 16, 2009
Contact name
Esther T Chan
Organization name
Celgene Corporation
Street address
1500 Owens Street, Suite 500
City
San Francisco
State/province
California
ZIP/Postal code
94158
Country
USA
Platform ID
GPL7400
Series (1)
GSE12975
Expression of known and predicted genes in tissues of Xenopus tropicalis (frog)
Data table header descriptions
ID_REF
Unique identifier
VALUE
Arcsinh-transformed normalized intensity.
Data table
ID_REF
VALUE
EnsFrogProbe_1
4.842994
EnsFrogProbe_2
5.011392
EnsFrogProbe_3
5.0561745
EnsFrogProbe_4
5.08824
EnsFrogProbe_5
4.953849
EnsFrogProbe_6
5.235557
EnsFrogProbe_7
5.042387
EnsFrogProbe_8
3.945774
EnsFrogProbe_9
4.199837
EnsFrogProbe_10
4.349155
EnsFrogProbe_11
3.9487415
EnsFrogProbe_12
4.4311905
EnsFrogProbe_13
4.621479
EnsFrogProbe_14
4.4395795
EnsFrogProbe_15
3.9320985
EnsFrogProbe_16
4.13669
EnsFrogProbe_17
4.5861115
EnsFrogProbe_18
6.0277895
EnsFrogProbe_19
5.6694275
EnsFrogProbe_20
5.9634715
Total number of rows:
41523
Table truncated, full table size
1134 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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