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Sample GSM3187 Query DataSets for GSM3187
Status Public on Apr 15, 2004
Title jzo003-v5-u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were wildtype littermates of Rp1-/- mice used in parallel experiments. At P10, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 13, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) jiewu.liu@gmail.com
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE118 P10 wildtype
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 35.2 A 0.9273
AFFX-MurIL10_at 20 20 29.2 A 0.574038
AFFX-MurIL4_at 20 20 39.2 A 0.603089
AFFX-MurFAS_at 20 20 83 A 0.41138
AFFX-BioB-5_at 20 20 1430.1 P 0.000258
AFFX-BioB-M_at 20 20 3801.4 P 0.000044
AFFX-BioB-3_at 20 20 1772.6 P 0.000044
AFFX-BioC-5_at 20 20 5367.4 P 0.00006
AFFX-BioC-3_at 20 20 3519.1 P 0.00007
AFFX-BioDn-5_at 20 20 5723.4 P 0.000044
AFFX-BioDn-3_at 20 20 21316.6 P 0.000052
AFFX-CreX-5_at 20 20 44357.9 P 0.000044
AFFX-CreX-3_at 20 20 66003.6 P 0.000044
AFFX-BioB-5_st 20 20 44.8 A 0.52976
AFFX-BioB-M_st 20 20 208.9 A 0.327079
AFFX-BioB-3_st 20 20 122.8 A 0.52976
AFFX-BioC-5_st 20 20 55.1 A 0.824672
AFFX-BioC-3_st 20 20 21.7 A 0.737173
AFFX-BioDn-5_st 20 20 438.4 A 0.102165
AFFX-BioDn-3_st 20 20 396.7 M 0.058444

Total number of rows: 12488

Table truncated, full table size 395 Kbytes.




Supplementary file Size Download File type/resource
GSM3187_jzo003-v5-u74av2.CEL.gz 2.7 Mb (ftp)(http) CEL

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