|
| Status |
Public on Oct 03, 2018 |
| Title |
genomic DNA from NB69 |
| Sample type |
genomic |
| |
|
| Source name |
NB69
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: NB69
|
| Growth protocol |
59 cell lines were grown in corresponding media described in Table S1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was isolated using QIAamp DNA Mini kit (QIAGEN, cat# 51304)
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Labeling was performed at the Harvard Medical School-Partners HealthCare Center for Genetics and Genomics according to Illimina protocol
|
| |
|
| Hybridization protocol |
DNA methylation profiling was carried out on the Illumina Infinium HumanMethylation450K BeadChip arrays according to Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard Illumina scanner setting
|
| Description |
cell line
|
| Data processing |
Illumina GenomeStudio software (GSGX v1.1.0)
The raw_data.txt contains unmethylated and methylated signal intensities
|
| |
|
| Submission date |
May 17, 2018 |
| Last update date |
Oct 03, 2018 |
| Contact name |
Kornelia Polyak |
| E-mail(s) |
kornelia_polyak@dfci.harvard.edu
|
| Phone |
617-632-2106
|
| Organization name |
Dana-Farber Cancer Institute
|
| Department |
Medical Oncology
|
| Lab |
Polyak
|
| Street address |
450 Brookline Ave
|
| City |
Boston |
| State/province |
MA |
| ZIP/Postal code |
02215 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE114598 |
TRPS1 is a lineage-specific transcriptional dependency in breast cancer [methylation array] |
| GSE114600 |
TRPS1 is a lineage-specific transcriptional dependency in breast cancer |
|
