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Sample GSM3141791 Query DataSets for GSM3141791
Status Public on May 15, 2018
Title SCP2
Sample type RNA
 
Source name Rat Schwann cell precursors
Organism Rattus norvegicus
Characteristics cell type: Rat Schwann cell precursors
culture conditions: Normal
Treatment protocol Rat oligodendrocyte precursors are cultured in modified Sato medium for around one week.
Growth protocol Rat Schwann cell precursors are cultured in modified Sato medium and grown.
Extracted molecule total RNA
Extraction protocol RNA samples were extracted from cells using ISOGEN(NIPPON GENE) and RNeasy mini kit (QIAGEN).
Label Cy5
Label protocol Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..
 
Hybridization protocol Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..
Scan protocol 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).
Description Rat Schwann cells
Data processing The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95% confidence intervals.
 
Submission date May 14, 2018
Last update date May 15, 2018
Contact name Satoshi Kondo
Organization name Toray Industries,Inc.
Street address 10-1 tebiro 6-chome
City Kamakura
State/province Kanagawa
ZIP/Postal code 248-8555
Country Japan
 
Platform ID GPL22440
Series (1)
GSE114441 Schwann cell precursor mRNA in normal culture conditions

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
ENSRNOG00000019074 1.402755
ENSRNOG00000015499 3.001996
ENSRNOG00000025803 1.177538
ENSRNOG00000001460 7.447457
ENSRNOG00000012653 16.295974
ENSRNOG00000017035 210.149477
ENSRNOG00000017988 18.179712
ENSRNOG00000013367 2.262985
ENSRNOG00000014209 93.609796
ENSRNOG00000037343 28.064937
ENSRNOG00000038921 0.801432
ENSRNOG00000024445 16.181274
ENSRNOG00000014343 4.40362
ENSRNOG00000026579 null
ENSRNOG00000021068 6.31126
ENSRNOG00000009635 9.335784
ENSRNOG00000000368 8.25251
ENSRNOG00000039819 37.017047
ENSRNOG00000016254 102.749084
ENSRNOG00000024932 12.935555

Total number of rows: 20174

Table truncated, full table size 558 Kbytes.




Supplementary file Size Download File type/resource
GSM3141791_QR4XN36.txt.gz 493.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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