|
Status |
Public on Jun 12, 2018 |
Title |
S164.G3 |
Sample type |
SRA |
|
|
Source name |
human_iPS-derived cerebral organoid
|
Organism |
Homo sapiens |
Characteristics |
donor id: H3 clone id: YH10 age (weeks): 5.57 date captured: 2016-05-04 Sex: Male cell type: iPS-derived cerebral organoid organoid id: H3.2 capture plate: 1784054172 capture chamber: 1784054172.G3
|
Growth protocol |
Cerebral organoids from Kadoshima et al., 2013
|
Extracted molecule |
total RNA |
Extraction protocol |
Fluidigm C1 small IFC (100-5759; 100-6201); SMARTer® Ultra™ Low RNA Kit (634832) Nextera XT tagmentation kit (FC-131-096)
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
Trim Galore 3.7 HISAT2 subread-1.5.0 function featureCounts GRCh38.79.gtf Genome_build: GRCh38.p2/Clint_PTRv2; UCSC: panTro6; GCF_002880755.1 Supplementary_files_format_and_content: log(CPM+1)
|
|
|
Submission date |
May 10, 2018 |
Last update date |
Jun 12, 2018 |
Contact name |
Alex Aaron Pollen |
E-mail(s) |
alex.pollen@ucsf.edu
|
Organization name |
UCSF
|
Department |
Neurology
|
Lab |
Pollen
|
Street address |
35 Medical Center Way
|
City |
San Francisco |
State/province |
California |
ZIP/Postal code |
94143-0525 |
Country |
USA |
|
|
Platform ID |
GPL16791 |
Series (1) |
GSE113931 |
High-resolution comparative analysis of great ape genomes |
|
Relations |
BioSample |
SAMN09197177 |
SRA |
SRX4071488 |