|
| Status |
Public on Jun 20, 2018 |
| Title |
BLC_54 |
| Sample type |
genomic |
| |
|
| Source name |
Breast
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: non medullary basal-like breast carcinoma
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extracted from frozen tumor samples using a standard phenol/chloroform procedure
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
GeneChips were scanned using the Affymetrix 7G Scanner GCS3000
|
| Description |
Genome profinling data from MBC and non MBC BLC
|
| Data processing |
CEL files were generated with Affymetrix Genechip Command Console 3.0.1 for SNP6 chips. Rawcopy (available at http://rawcopy.org/) was used to estimate copy number and B-allele frequency
|
| |
|
| Submission date |
May 08, 2018 |
| Last update date |
Jun 20, 2018 |
| Contact name |
Cecile Laurent |
| E-mail(s) |
cecile.laurent@curie.fr
|
| Organization name |
Institut Curie
|
| Street address |
26 rue d'ulm
|
| City |
Paris Cedex 05 |
| ZIP/Postal code |
75248 |
| Country |
France |
| |
|
| Platform ID |
GPL6801 |
| Series (2) |
| GSE114183 |
Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BRCAness. |
| GSE114269 |
Medullary breast carcinoma, a triple-negative breast cancer subtype associated with BCLG overexpression and BRCAness |
|
