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Sample GSM309557 Query DataSets for GSM309557
Status Public on Nov 01, 2008
Title storage protein suppression expt, RNAi biol rep1, tech rep2
Sample type RNA
Source name 150 mg RNAi cotyledon with suppressed storage proteins
Organism Glycine max
Characteristics 150 mg transgenic soybean cotyledon with both storage proteins suppressed, greenhouse grown
Extracted molecule total RNA
Extraction protocol acid-based phenol
Qiagen spin column for clean-up
Label one cycle target labeling, affymetrix 900493
Label protocol genechip expression analysis technical manual
Hybridization protocol genechip expression analysis technical manual
Scan protocol genechip expression analysis technical manual
Description 3 samples: 1 control, 2 biological samples
jack control, 2 tech replicates
2 RNAi samples, 2 tech replicates each
Data processing arrayassist software
Submission date Aug 01, 2008
Last update date Aug 28, 2008
Contact name monica schmidt
Organization name danforth center
Lab herman
Street address 975 n. warson
City st.louis
State/province MO
ZIP/Postal code 63132
Country USA
Platform ID GPL4592
Series (1)
GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons

Data table header descriptions
VALUE MAS5 signal
ABS_CALL absence call
DETECTION P-VALUE p-value detected

Data table
AFFX-BioB-5_at 346.333 P 0.000509415
AFFX-BioB-M_at 562.289 P 5.16732e-05
AFFX-BioB-3_at 314.629 P 0.000169227
AFFX-BioC-5_at 906.158 P 0.00110197
AFFX-BioC-3_at 842.232 P 7.00668e-05
AFFX-BioDn-5_at 3465.49 P 4.42873e-05
AFFX-BioDn-3_at 4599.86 P 0.000169227
AFFX-CreX-5_at 17628.9 P 5.16732e-05
AFFX-CreX-3_at 20581.7 P 4.42873e-05
AFFX-DapX-5_at 3340.04 P 4.42873e-05
AFFX-DapX-M_at 7741.69 P 4.42873e-05
AFFX-DapX-3_at 9483.23 P 4.42873e-05
AFFX-LysX-5_at 405.291 P 4.42873e-05
AFFX-LysX-M_at 864.287 P 4.42873e-05
AFFX-LysX-3_at 1858.25 P 5.16732e-05
AFFX-PheX-5_at 925.49 P 4.42873e-05
AFFX-PheX-M_at 1243.58 P 4.42873e-05
AFFX-PheX-3_at 1079.7 P 4.42873e-05
AFFX-ThrX-5_at 1001.38 P 6.02111e-05
AFFX-ThrX-M_at 1679.59 P 4.42873e-05

Total number of rows: 61170

Table truncated, full table size 2417 Kbytes.

Supplementary file Size Download File type/resource
GSM309557.CEL.gz 5.1 Mb (ftp)(http) CEL
GSM309557.CHP.gz 326.4 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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