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Sample GSM309531 Query DataSets for GSM309531
Status Public on Nov 01, 2008
Title storage protein suppression expt, RNAi biol rep2, tech rep2
Sample type RNA
 
Source name 150mg cotyledon RNAiSP biol rep 2 tech rep 2
Organism Glycine max
Characteristics 150mg cotyledon RNAiSP biol rep 2 tech rep 2
Extracted molecule total RNA
Extraction protocol acid-based phenol
Qiagen spin column for cleanup
Label one cycle target, affymetrix part#900493
Label protocol genechip expression analysis technical manual
 
Hybridization protocol genechip expression analysis technical manual
Scan protocol genechip expression analysis technical manual
Description storage protein suppression comparison
Data processing arrayassist software
 
Submission date Jul 31, 2008
Last update date Aug 28, 2008
Contact name monica schmidt
Organization name danforth center
Lab herman
Street address 975 n. warson
City st.louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platform ID GPL4592
Series (1)
GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons

Data table header descriptions
ID_REF
VALUE MAS5 signal
ABS_CALL absence call
DETECTION P-VALUE detected p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 387.454 P 0.000662269
AFFX-BioB-M_at 760.428 P 7.00668e-05
AFFX-BioB-3_at 461.368 P 0.00010954
AFFX-BioC-5_at 945.507 P 0.00110197
AFFX-BioC-3_at 894.307 P 4.42873e-05
AFFX-BioDn-5_at 4265.56 P 4.42873e-05
AFFX-BioDn-3_at 5893.58 P 0.000126798
AFFX-CreX-5_at 19807.6 P 5.16732e-05
AFFX-CreX-3_at 25960.6 P 4.42873e-05
AFFX-DapX-5_at 3634.2 P 4.42873e-05
AFFX-DapX-M_at 7819.21 P 4.42873e-05
AFFX-DapX-3_at 9661.96 P 4.42873e-05
AFFX-LysX-5_at 383.723 P 4.42873e-05
AFFX-LysX-M_at 744.737 P 4.42873e-05
AFFX-LysX-3_at 1719.1 P 5.16732e-05
AFFX-PheX-5_at 778.573 P 5.16732e-05
AFFX-PheX-M_at 1324.84 P 6.02111e-05
AFFX-PheX-3_at 1068.89 P 4.42873e-05
AFFX-ThrX-5_at 1074.41 P 7.00668e-05
AFFX-ThrX-M_at 1773.81 P 4.42873e-05

Total number of rows: 61170

Table truncated, full table size 2414 Kbytes.




Supplementary file Size Download File type/resource
GSM309531.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM309531.CHP.gz 328.0 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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