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Sample GSM309530 Query DataSets for GSM309530
Status Public on Nov 01, 2008
Title storage protein suppression expt, RNAi biol rep2, tech rep1
Sample type RNA
 
Source name 150mg RNAiSP- soybean cotyledon
Organism Glycine max
Characteristics 150mg RNAiSP cotyledon, greenhouse grown
Extracted molecule total RNA
Extraction protocol acid-based phenol
Qiagen spin column for cleanup
Label one cycle target, affymetrix part#900493
Label protocol genechip expression analysis technical manual
 
Hybridization protocol genechip expression analysis technical manual
Scan protocol genechip expression analysis technical manual
Description storage protein suppression comparison
Data processing arrayassist software
 
Submission date Jul 31, 2008
Last update date Aug 28, 2008
Contact name monica schmidt
Organization name danforth center
Lab herman
Street address 975 n. warson
City st.louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platform ID GPL4592
Series (1)
GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons

Data table header descriptions
ID_REF
VALUE MAS5 signal
ABS_CALL absence call
DETECTION P-VALUE detected p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 352.718 P 0.000296708
AFFX-BioB-M_at 625.715 P 4.42873e-05
AFFX-BioB-3_at 341.077 P 6.02111e-05
AFFX-BioC-5_at 817.805 P 0.000972149
AFFX-BioC-3_at 851.125 P 4.42873e-05
AFFX-BioDn-5_at 3537.33 P 4.42873e-05
AFFX-BioDn-3_at 5012.62 P 0.000146581
AFFX-CreX-5_at 17709.9 P 5.16732e-05
AFFX-CreX-3_at 21280.8 P 4.42873e-05
AFFX-DapX-5_at 3496.39 P 4.42873e-05
AFFX-DapX-M_at 7215.01 P 4.42873e-05
AFFX-DapX-3_at 8832.53 P 4.42873e-05
AFFX-LysX-5_at 440.619 P 4.42873e-05
AFFX-LysX-M_at 748.956 P 4.42873e-05
AFFX-LysX-3_at 1707.54 P 4.42873e-05
AFFX-PheX-5_at 818.653 P 5.16732e-05
AFFX-PheX-M_at 1214.71 P 4.42873e-05
AFFX-PheX-3_at 1019.21 P 4.42873e-05
AFFX-ThrX-5_at 989.903 P 7.00668e-05
AFFX-ThrX-M_at 1643.32 P 4.42873e-05

Total number of rows: 61170

Table truncated, full table size 2418 Kbytes.




Supplementary file Size Download File type/resource
GSM309530.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM309530.CHP.gz 327.1 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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