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Sample GSM309344 Query DataSets for GSM309344
Status Public on Aug 15, 2008
Title transgenic RNAiOleosin, biol rep 1, tech rep 2
Sample type RNA
Source name transgenic 150mg cotyledon RNAi0le-2
Organism Glycine max
Characteristics 150 mg cotyledon RNAioleosin rep2
Extracted molecule total RNA
Extraction protocol acid-based phenol extraction to extract total RNA from seeds
Qiagen spin column to clean sample
Label biotin
Label protocol Genechip expression analysis technical manual
Hybridization protocol Genechip expression analysis technical manual
Scan protocol Genechip expression analysis technical manual
Description rep 2 of 2 for control sample
Data processing data was processed by arrayassist
Submission date Jul 30, 2008
Last update date Jul 31, 2008
Contact name monica schmidt
Organization name danforth center
Lab herman
Street address 975 n. warson
City st.louis
State/province MO
ZIP/Postal code 63132
Country USA
Platform ID GPL4592
Series (1)
GSE12300 Suppression of oleosin in soybean cotyledon

Data table header descriptions
VALUE value
ABS_CALL absence

Data table
AFFX-BioB-5_at 770.936 P 0.000146581
AFFX-BioB-M_at 1369.6 P 4.42873e-05
AFFX-BioB-3_at 760.003 P 4.42873e-05
AFFX-BioC-5_at 2118.67 P 8.14279e-05
AFFX-BioC-3_at 2673.19 P 4.42873e-05
AFFX-BioDn-5_at 6049.66 P 4.42873e-05
AFFX-BioDn-3_at 8720.11 P 0.00010954
AFFX-CreX-5_at 28179.2 P 5.16732e-05
AFFX-CreX-3_at 31834.1 P 4.42873e-05
AFFX-DapX-5_at 3713.44 P 4.42873e-05
AFFX-DapX-M_at 7149.11 P 5.16732e-05
AFFX-DapX-3_at 9455.81 P 4.42873e-05
AFFX-LysX-5_at 442.97 P 5.16732e-05
AFFX-LysX-M_at 802.911 P 4.42873e-05
AFFX-LysX-3_at 1839.73 P 5.16732e-05
AFFX-PheX-5_at 744.798 P 4.42873e-05
AFFX-PheX-M_at 1212.91 P 4.42873e-05
AFFX-PheX-3_at 1035.05 P 4.42873e-05
AFFX-ThrX-5_at 821.172 P 4.42873e-05
AFFX-ThrX-M_at 1573.13 P 4.42873e-05

Total number of rows: 61170

Table truncated, full table size 2417 Kbytes.

Supplementary file Size Download File type/resource
GSM309344.CEL.gz 4.8 Mb (ftp)(http) CEL
GSM309344.CHP.gz 327.9 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table

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