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Sample GSM309343 Query DataSets for GSM309343
Status Public on Aug 15, 2008
Title transgenic RNAiOleosin, biol rep 1, tech rep 1
Sample type RNA
 
Source name transgenic RNAiOle1
Organism Glycine max
Characteristics transgenic RNAiOle 150mg cotyledon
Extracted molecule total RNA
Extraction protocol acid-based phenol extraction to extract total RNA from seeds
Qiagen spin column to clean sample
Label biotin
Label protocol Genechip expression analysis technical manual
 
Hybridization protocol Genechip expression analysis technical manual
Scan protocol Genechip expression analysis technical manual
Description rep 2 of 2 for control sample
Data processing data was processed by arrayassist
 
Submission date Jul 30, 2008
Last update date Jul 31, 2008
Contact name monica schmidt
Organization name danforth center
Lab herman
Street address 975 n. warson
City st.louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Platform ID GPL4592
Series (1)
GSE12300 Suppression of oleosin in soybean cotyledon

Data table header descriptions
ID_REF
VALUE value
ABS_CALL absence
DETECTION P-VALUE p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 776.733 P 0.000146581
AFFX-BioB-M_at 1392.57 P 4.42873e-05
AFFX-BioB-3_at 774.474 P 4.42873e-05
AFFX-BioC-5_at 2155.03 P 7.00668e-05
AFFX-BioC-3_at 2775.47 P 5.16732e-05
AFFX-BioDn-5_at 6193.03 P 4.42873e-05
AFFX-BioDn-3_at 9697.71 P 8.14279e-05
AFFX-CreX-5_at 31347.9 P 5.16732e-05
AFFX-CreX-3_at 35384.9 P 4.42873e-05
AFFX-DapX-5_at 3438.44 P 4.42873e-05
AFFX-DapX-M_at 6672.43 P 4.42873e-05
AFFX-DapX-3_at 9832.96 P 4.42873e-05
AFFX-LysX-5_at 436.577 P 4.42873e-05
AFFX-LysX-M_at 864.86 P 4.42873e-05
AFFX-LysX-3_at 2028.37 P 4.42873e-05
AFFX-PheX-5_at 707.82 P 4.42873e-05
AFFX-PheX-M_at 1050.93 P 4.42873e-05
AFFX-PheX-3_at 1016.22 P 4.42873e-05
AFFX-ThrX-5_at 695.643 P 4.42873e-05
AFFX-ThrX-M_at 1474.7 P 4.42873e-05

Total number of rows: 61170

Table truncated, full table size 2419 Kbytes.




Supplementary file Size Download File type/resource
GSM309343.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM309343.CHP.gz 330.0 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table

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