|
| Status |
Public on Jul 25, 2022 |
| Title |
Primary breast cancer, sample 88 |
| Sample type |
RNA |
| |
|
| Source name |
Snap frozen primary breast tumor
|
| Organism |
Homo sapiens |
| Characteristics |
site of relapse (brain or other): other
survival time (months): 6
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol on Affymetrix scanner 3000
|
| Description |
EMC204_88
2439.CEL
|
| Data processing |
MAS5 parameters from affy R package, available at www.bioconductor.org using default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 600.
|
| |
|
| Submission date |
Jul 25, 2022 |
| Last update date |
Jul 25, 2022 |
| Contact name |
Marcel Smid |
| E-mail(s) |
m.smid@erasmusmc.nl
|
| Organization name |
Erasmus Medical Centre
|
| Department |
Medical Oncology
|
| Street address |
Dr. Molewaterplein 50-60
|
| City |
Rotterdam |
| ZIP/Postal code |
3015GE |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE12276 |
Expression data from primary breast tumors |
|
| Relations |
| Reanalyzed by |
GSE31519 |
| Reanalyzed by |
GSE119087 |
