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Sample GSM30769 Query DataSets for GSM30769
Status Public on Sep 21, 2004
Title ENCODE: TAF1-THP1 Rep2
Sample type genomic
 
Channel 1
Source name Chromatin immunoprecipitated DNA using TAF1 antibody
Organism Homo sapiens
Extracted molecule genomic DNA
 
Channel 2
Source name input DNA
Organism Homo sapiens
Extracted molecule genomic DNA
 
 
Description Genome-wide location analysis of TAF1 binding at ENCODE regions in THP1 cells. Replicate 2 of 3.
 
Submission date Sep 17, 2004
Last update date Nov 22, 2005
Contact name Chunxu Qu
E-mail(s) qchunxu@ucsd.edu
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Platform ID GPL1454
Series (1)
GSE1778 ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
SIGNIFICANCE significance
P-VAL p-value calculated using single array error model
F635_INT F635 intensity with background intensity subtracted
F532_INT F532 intensity with background intensity subtracted
F635_MEDIAN F635 mdian intensity
F635_MEAN F635 mean intensity
F635_SD F635 standard deviation
B635_MEDIAN B635 median intensity
B635_MEAN B635 mean intensity
B635_SD B635 standard deviation
F532_MEDIAN F532 median intensity
F532_MEAN F532 mean intensity
F532_SD F532 standard deviation
B532_MEDIAN B532 median intensity
B532_MEAN B532 mean intensity
B532_SD B532 standard deviation
FLAG flag from GenePro, 0 is useful
PRE_VALUE enrichment value (F635/F532)
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE SIGNIFICANCE P-VAL F635_INT F532_INT F635_MEDIAN F635_MEAN F635_SD B635_MEDIAN B635_MEAN B635_SD F532_MEDIAN F532_MEAN F532_SD B532_MEDIAN B532_MEAN B532_SD FLAG PRE_VALUE UNF_VALUE
1 0.5459683 0.2114 0.004949 1662.5 1135.40 1745 1785 565 81 110 107 1067 1063 247 197 222 624 0 1.46 0.5459683
2 0.3895673 0.1506 0.033087 1943.5 1480.53 2026 1988 780 81 108 92 1322 1238 499 188 191 58 0 1.31 0.3895673
3 0.3103403 0.0996 0.112214 1442.5 1160.24 1533 1754 1481 89 142 293 1076 1147 953 187 211 192 0 1.24 0.3103403
4 0.5459683 0.2091 0.005365 2420.5 1663.56 2500 2516 727 78 107 102 1464 1465 391 190 201 191 0 1.46 0.5459683
5 0.5058913 0.1646 0.022284 2352.5 1653.10 2432 2456 732 78 106 92 1453 1629 2368 187 192 128 0 1.42 0.5058913
6 0.6415463 0.2385 0.001807 1819.5 1165.47 1899 1899 788 78 106 91 1079 1121 419 186 190 58 0 1.56 0.6415463
7 0.4114263 0.1573 0.027508 1044.5 785.04 1127 1141 462 81 104 88 781 801 224 179 183 56 0 1.33 0.4114263
8 0.2265093 0.0902 0.135486 2160.5 1845.27 2246 2241 637 84 109 91 1593 1562 420 180 184 57 0 1.17 0.2265093
9 0.0426443 0.0173 0.416505 805.5 781.12 892 917 367 85 110 93 780 768 207 181 185 60 0 1.03 0.0426443
10 0.2750073 0.0994 0.112613 475.5 394.16 559 600 308 82 110 91 480 485 160 177 182 57 0 1.21 0.2750073
11 0.2986583 0.1184 0.074355 1471.5 1192.92 1550 1565 559 77 105 90 1091 1093 245 177 182 71 0 1.23 0.2986583
12 0.1243283 0.0500 0.270744 3131.5 2870.21 3216 3112 1012 83 109 92 2380 2293 506 183 188 57 0 1.09 0.1243283
13 0.0840643 0.0330 0.343619 1821.5 1719.77 1908 1921 587 85 112 94 1503 1485 351 186 194 74 0 1.06 0.0840643
14 0.4329593 0.1614 0.024462 1454.5 1075.27 1536 1642 786 80 105 87 1010 1019 438 186 194 136 0 1.35 0.4329593
15 0.5360533 0.1968 0.008163 1095.5 757.59 1180 1207 544 83 112 96 771 749 311 190 194 58 0 1.45 0.5360533
16 0.3448283 0.1349 0.049827 1394.5 1094.88 1477 1498 535 81 108 91 1032 972 342 193 197 61 0 1.27 0.3448283
17 0.1763233 0.0682 0.202802 1532.5 1360.26 1615 1643 511 81 109 93 1229 1220 279 187 190 55 0 1.13 0.1763233
18 0.5655973 0.2093 0.005326 924.5 622.94 1007 1063 494 81 108 93 660 688 205 182 187 56 0 1.48 0.5655973
19 0.4222333 0.1643 0.022486 3683.5 2752.55 3765 3668 1103 80 107 91 2287 2210 657 180 185 54 0 1.34 0.4222333
20 0.3895673 0.1504 0.033270 1962.5 1502.76 2048 2035 623 84 111 92 1337 1299 401 186 190 57 0 1.31 0.3895673

Total number of rows: 25392

Table truncated, full table size 2756 Kbytes.




Supplementary file Size Download File type/resource
GSM30769_cy3.tif.gz 60.3 Mb (ftp)(http) TIFF
GSM30769_cy5.tif.gz 59.8 Mb (ftp)(http) TIFF

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