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Sample GSM2998066 Query DataSets for GSM2998066
Status Public on May 08, 2018
Title B2 mix
Sample type genomic
 
Source name MACS purified blood cells
Organism Homo sapiens
Characteristics sample_plate: EPIC17_Plate01
sample_well: E09
sample_name: B2 mix
sample_group: ChristensenLab
ChIP: 9
array_well: 201868590267_R05C01
cell type: MIX
cd4t: 16
cd8t: 11
bcell: 1
nk: 2
mono: 7
neu: 63
purity: NA
Sex: NA
age: NA
weight_kg: NA
height_m: NA
bmi: NA
bmi_clas: NA
ethnicity_wide: NA
ethnic_self: NA
smoker: NA
array: R05C01
slide: 403737180534/2
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylationEPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Reconstructed DNA mixture method B
201868590267_R05C01
Data processing BeadStudio software
 
Submission date Feb 13, 2018
Last update date May 08, 2018
Contact name Lucas A. Salas
E-mail(s) lucas.a.salas@dartmouth.edu
Organization name Geisel School of Medicine at Dartmouth
Department Epidemiology
Lab Salas Lab
Street address 1 Medical Center Dr, DHMC
City Lebanon
State/province NH
ZIP/Postal code 03756
Country USA
 
Platform ID GPL21145
Series (2)
GSE110554 FlowSorted.Blood.EPIC: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray (II)
GSE110555 SuperSeries: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

Data table header descriptions
ID_REF
VALUE Average Beta (no normalization)
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg18478105 0.028413983 0
cg09835024 0.026517032 0
cg14361672 0.846274101 0
cg01763666 0.794815358 0
cg12950382 0.926834131 0
cg02115394 0.101641306 0
cg25813447 0.143020923 0
cg07779434 0.155306394 0
cg13417420 0.136517451 0
cg12480843 0.019888837 0
cg26724186 0.917921386 0
cg24133276 0.057524488 0
cg00617867 0.894326683 0
cg13773083 0.32178419 0
cg17236668 0.94697027 0
cg19607165 0.104926466 0
cg11073926 0.081101377 0
cg08770523 0.022014957 0
cg08795713 0.883268482 0
cg24040570 0.016217505 0

Total number of rows: 866091

Table truncated, full table size 21056 Kbytes.




Supplementary file Size Download File type/resource
GSM2998066_201868590267_R05C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM2998066_201868590267_R05C01_Red.idat.gz 7.0 Mb (ftp)(http) IDAT
Processed data included within Sample table

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