|
Status |
Public on May 08, 2018 |
Title |
B2 mix |
Sample type |
genomic |
|
|
Source name |
MACS purified blood cells
|
Organism |
Homo sapiens |
Characteristics |
sample_plate: EPIC17_Plate01 sample_well: E09 sample_name: B2 mix sample_group: ChristensenLab ChIP: 9 array_well: 201868590267_R05C01 cell type: MIX cd4t: 16 cd8t: 11 bcell: 1 nk: 2 mono: 7 neu: 63 purity: NA Sex: NA age: NA weight_kg: NA height_m: NA bmi: NA bmi_clas: NA ethnicity_wide: NA ethnic_self: NA smoker: NA array: R05C01 slide: 403737180534/2
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium HumanMethylationEPIC Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
Reconstructed DNA mixture method B 201868590267_R05C01
|
Data processing |
BeadStudio software
|
|
|
Submission date |
Feb 13, 2018 |
Last update date |
May 08, 2018 |
Contact name |
Lucas A. Salas |
E-mail(s) |
lucas.a.salas@dartmouth.edu
|
Organization name |
Geisel School of Medicine at Dartmouth
|
Department |
Epidemiology
|
Lab |
Salas Lab
|
Street address |
1 Medical Center Dr, DHMC
|
City |
Lebanon |
State/province |
NH |
ZIP/Postal code |
03756 |
Country |
USA |
|
|
Platform ID |
GPL21145 |
Series (2) |
GSE110554 |
FlowSorted.Blood.EPIC: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray (II) |
GSE110555 |
SuperSeries: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray |
|