NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2828950 Query DataSets for GSM2828950
Status Public on Oct 24, 2017
Title ChIP-seq from vagina (ENCLB809WHU)
Sample type SRA
 
Source name Homo sapiens vagina tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: vagina
biomaterial_type: tissue
biosample encode accession: ENCBS698MLA (SAMN07791152)
Sex: female
lab: Richard Myers, HAIB
age: 53 year
donor_id: ENCDO793LXB
dev stage: adult
link: ENCBS698MLA at ENCODE; https://www.encodeproject.org/ENCBS698MLA/
link: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
link: data sheet; https://www.encodeproject.org/documents/58b2d578-8eae-4d61-998c-ca195b68782c/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image; https://www.encodeproject.org/documents/4f67ef38-4ded-41cb-b456-56c2bc46dc9d/@@download/attachment/83378.svs
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR877SNO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on vagina
experiment encode accession: ENCSR877SNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR466CAA
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB809WHU
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 24, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE106039 ChIP-seq from vagina (ENCSR877SNO)
Relations
BioSample SAMN07791152
SRA SRX3323045
Named Annotation GSM2828950_ENCFF135IWU_signal_p-value_GRCh38.bigWig
Named Annotation GSM2828950_ENCFF718FJH_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2828950_ENCFF002GHA_signal_p-value_hg19.bigWig
Named Annotation GSM2828950_ENCFF737LLC_fold_change_over_control_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2828950_ENCFF002GHA_signal_p-value_hg19.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2828950_ENCFF135IWU_signal_p-value_GRCh38.bigWig 1014.7 Mb (ftp)(http) BIGWIG
GSM2828950_ENCFF169GVB_peaks_GRCh38.bed.gz 5.1 Mb (ftp)(http) BED
GSM2828950_ENCFF169WDW_peaks_hg19.bigBed 11.1 Mb (ftp)(http) BIGBED
GSM2828950_ENCFF235SRJ_peaks_hg19.bed.gz 5.1 Mb (ftp)(http) BED
GSM2828950_ENCFF242HMY_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 4.4 Kb (ftp)(http) BED
GSM2828950_ENCFF270YIJ_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 58.0 Kb (ftp)(http) BIGBED
GSM2828950_ENCFF394PKE_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 57.8 Kb (ftp)(http) BIGBED
GSM2828950_ENCFF718FJH_fold_change_over_control_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2828950_ENCFF737LLC_fold_change_over_control_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2828950_ENCFF797HPJ_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 4.6 Kb (ftp)(http) BED
GSM2828950_ENCFF935ITS_peaks_GRCh38.bigBed 11.1 Mb (ftp)(http) BIGBED
GSM2828950_ENCLB809WHU_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap