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Sample GSM2828919

Query DataSets for GSM2828919

Status

Public on Oct 24, 2017

Title

ChIP-seq from esophagus muscularis mucosa (ENCLB851FLN)

Sample type

SRA

Source name

Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)

Organism

Homo sapiens

Characteristics

antibody: EP300
tissue_type: esophagus muscularis mucosa
biomaterial_type: tissue
biosample encode accession: ENCBS735VKK (SAMN07791178)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS735VKK at ENCODE; https://www.encodeproject.org/ENCBS735VKK/
link: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
link: data sheet; https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image; https://www.encodeproject.org/documents/81de566a-87a0-4f4d-8614-0767dcb0766c/@@download/attachment/82353.svs

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR862NOW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on muscle layer of esophagus
experiment encode accession: ENCSR862NOW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR452KMJ
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB851FLN

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 23, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE106019

ChIP-seq from esophagus muscularis mucosa (ENCSR862NOW)

Relations

BioSample

SAMN07791178

SRA

SRX3323014

Named Annotation

GSM2828919_ENCFF631VTP_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2828919_ENCFF302VSW_signal_p-value_hg19.bigWig

Named Annotation

GSM2828919_ENCFF002XED_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2828919_ENCFF305JQA_signal_p-value_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2828919_ENCFF002XED_fold_change_over_control_GRCh38.bigWig	1.5 Gb	(ftp)(http)	BIGWIG
GSM2828919_ENCFF042IVB_peaks_hg19.bed.gz	5.6 Mb	(ftp)(http)	BED
GSM2828919_ENCFF087RBS_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz	14.6 Kb	(ftp)(http)	BED
GSM2828919_ENCFF123QQN_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed	83.6 Kb	(ftp)(http)	BIGBED
GSM2828919_ENCFF207RWS_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz	14.3 Kb	(ftp)(http)	BED
GSM2828919_ENCFF302VSW_signal_p-value_hg19.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSM2828919_ENCFF305JQA_signal_p-value_GRCh38.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSM2828919_ENCFF459XDP_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed	85.9 Kb	(ftp)(http)	BIGBED
GSM2828919_ENCFF483STZ_peaks_GRCh38.bed.gz	5.6 Mb	(ftp)(http)	BED
GSM2828919_ENCFF631VTP_fold_change_over_control_hg19.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSM2828919_ENCFF945WSK_peaks_hg19.bigBed	11.4 Mb	(ftp)(http)	BIGBED
GSM2828919_ENCFF970SYA_peaks_GRCh38.bigBed	11.4 Mb	(ftp)(http)	BIGBED
GSM2828919_ENCLB851FLN_README.txt.gz	1.2 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file