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Sample GSM2828825 Query DataSets for GSM2828825
Status Public on Oct 24, 2017
Title Hi-C from astrocyte of the spinal cord (ENCLB575YVL)
Sample type SRA
Source name Homo sapiens astrocyte of the spinal cord primary cell
Organism Homo sapiens
Characteristics cell_type: astrocyte of the spinal cord
biomaterial_type: primary cell
description: astrocytes spinal cord
biosample encode accession: ENCBS995OME (SAMN07791343)
Sex: not collected
lab: John Stamatoyannopoulos, UW
health state: unknown
age: unknown
donor_id: ENCDO224AAA
dev stage: unknown
link: ENCBS995OME at ENCODE;
link: derived from ENCODE donor ENCDO224AAA;
link: other;
link: ENCODE dbxrefs HA-sp;
link: ScienCell sample source;
Extracted molecule genomic DNA
Extraction protocol not provided
Library strategy Hi-C
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2000
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on astrocyte of the spinal cord
experiment encode accession: ENCSR974LXZ
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB575YVL
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 23, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE105957 Hi-C from astrocyte of the spinal cord (ENCSR974LXZ)
BioSample SAMN07791343
SRA SRX3322978

Supplementary file Size Download File type/resource
GSM2828825_ENCLB575YVL_README.txt.gz 2.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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