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Sample GSM2828825

Query DataSets for GSM2828825

Status

Public on Oct 24, 2017

Title

Hi-C from astrocyte of the spinal cord (ENCLB575YVL)

Sample type

SRA

Source name

Homo sapiens astrocyte of the spinal cord primary cell

Organism

Homo sapiens

Characteristics

cell_type: astrocyte of the spinal cord
biomaterial_type: primary cell
description: astrocytes spinal cord
biosample encode accession: ENCBS995OME (SAMN07791343)
Sex: not collected
lab: John Stamatoyannopoulos, UW
health state: unknown
age: unknown
donor_id: ENCDO224AAA
dev stage: unknown
link: ENCBS995OME at ENCODE; https://www.encodeproject.org/ENCBS995OME/
link: derived from ENCODE donor ENCDO224AAA; https://www.encodeproject.org/ENCDO224AAA/
link: other; https://www.encodeproject.org/documents/1b89999f-87c6-4760-9aa6-64b2b139248e/@@download/attachment/HA-sp_Stam_protocol.pdf
link: ENCODE dbxrefs HA-sp; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HA-sp
link: ScienCell sample source; http://www.sciencellonline.com/human-astrocytes-spinal-cord.html

Extracted molecule

genomic DNA

Extraction protocol

not provided

Library strategy

Hi-C

Library source

genomic

Library selection

other

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR974LXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on astrocyte of the spinal cord
experiment encode accession: ENCSR974LXZ
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB575YVL

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 23, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105957

Hi-C from astrocyte of the spinal cord (ENCSR974LXZ)

Relations

BioSample

SAMN07791343

SRA

SRX3322978

Supplementary file	Size	Download	File type/resource
GSM2828825_ENCLB575YVL_README.txt.gz	2.5 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record