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Sample GSM2828825 Query DataSets for GSM2828825
Status Public on Oct 24, 2017
Title Hi-C from astrocyte of the spinal cord (ENCLB575YVL)
Sample type SRA
 
Source name Homo sapiens astrocyte of the spinal cord primary cell
Organism Homo sapiens
Characteristics cell_type: astrocyte of the spinal cord
biomaterial_type: primary cell
description: astrocytes spinal cord
biosample encode accession: ENCBS995OME (SAMN07791343)
Sex: not collected
lab: John Stamatoyannopoulos, UW
health state: unknown
age: unknown
donor_id: ENCDO224AAA
dev stage: unknown
link: ENCBS995OME at ENCODE; https://www.encodeproject.org/ENCBS995OME/
link: derived from ENCODE donor ENCDO224AAA; https://www.encodeproject.org/ENCDO224AAA/
link: other; https://www.encodeproject.org/documents/1b89999f-87c6-4760-9aa6-64b2b139248e/@@download/attachment/HA-sp_Stam_protocol.pdf
link: ENCODE dbxrefs HA-sp; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HA-sp
link: ScienCell sample source; http://www.sciencellonline.com/human-astrocytes-spinal-cord.html
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy Hi-C
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR974LXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on astrocyte of the spinal cord
experiment encode accession: ENCSR974LXZ
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB575YVL
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 23, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105957 Hi-C from astrocyte of the spinal cord (ENCSR974LXZ)
Relations
BioSample SAMN07791343
SRA SRX3322978

Supplementary file Size Download File type/resource
GSM2828825_ENCLB575YVL_README.txt.gz 2.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

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