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Sample GSM2828672

Query DataSets for GSM2828672

Status

Public on Oct 24, 2017

Title

ChIP-seq from upper lobe of left lung (ENCLB913MEN)

Sample type

SRA

Source name

Homo sapiens upper lobe of left lung tissue male adult (54 years)

Organism

Homo sapiens

Characteristics

antibody: Control
tissue_type: upper lobe of left lung
biomaterial_type: tissue
biosample encode accession: ENCBS708WNV (SAMN07791160)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS708WNV at ENCODE; https://www.encodeproject.org/ENCBS708WNV/
link: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/632f8c04-c6ae-4a33-b452-2fcbeff100f3/@@download/attachment/82358.svs
link: data sheet; https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR949XFR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 26 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR949XFR
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB913MEN

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 23, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105904

ChIP-seq from upper lobe of left lung (ENCSR949XFR)

Relations

BioSample

SAMN07791160

SRA

SRX3322819

Supplementary file	Size	Download	File type/resource
GSM2828672_ENCLB913MEN_README.txt.gz	321 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file