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GEO accession:
Sample GSM2828497
Query DataSets for GSM2828497
Status
Public on Oct 24, 2017
Title
ChIP-seq from prostate gland (ENCLB866TLS)
Sample type
SRA
Source name
Homo sapiens prostate gland tissue male adult (37 years)
Organism
Homo sapiens
Characteristics
antibody: EP300
tissue_type: prostate gland
biomaterial_type: tissue
biosample encode accession: ENCBS720KJI (SAMN07791167)
Sex: male
lab: Richard Myers, HAIB
age: 37 year
donor_id: ENCDO845WKR
dev stage: adult
link: ENCBS720KJI at ENCODE;
https://www.encodeproject.org/ENCBS720KJI/
link: derived from ENCODE donor ENCDO845WKR;
https://www.encodeproject.org/ENCDO845WKR/
link: general protocol;
https://www.encodeproject.org/documents/a3ee0bcf-48e3-4173-a23e-28a370090f00/@@download/attachment/ENCDO845WKR_collection_times.pdf
link: data sheet;
https://www.encodeproject.org/documents/c530ba5c-4343-49bc-898b-5579c287a67e/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule
genomic DNA
Extraction protocol
extraction method: see document
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR912ZIY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on prostate
experiment encode accession: ENCSR912ZIY
assay title: ChIP-seq
assembly: hg19
possible controls: ENCSR689LFI
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB866TLS
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Oct 23, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE105835
ChIP-seq from prostate gland (ENCSR912ZIY)
Relations
BioSample
SAMN07791167
SRA
SRX3322725
Named Annotation
GSM2828497_ENCFF257IFO_signal_p-value_hg19.bigWig
Named Annotation
GSM2828497_ENCFF941VKG_fold_change_over_control_hg19.bigWig
Supplementary file
Size
Download
File type/resource
GSM2828497_ENCFF257IFO_signal_p-value_hg19.bigWig
788.8 Mb
(ftp)
(http)
BIGWIG
GSM2828497_ENCFF661EWJ_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed
63.2 Kb
(ftp)
(http)
BIGBED
GSM2828497_ENCFF852XQI_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz
13.4 Kb
(ftp)
(http)
BED
GSM2828497_ENCFF854NUO_peaks_hg19.bed.gz
5.7 Mb
(ftp)
(http)
BED
GSM2828497_ENCFF879XZJ_peaks_hg19.bigBed
12.3 Mb
(ftp)
(http)
BIGBED
GSM2828497_ENCFF941VKG_fold_change_over_control_hg19.bigWig
630.9 Mb
(ftp)
(http)
BIGWIG
GSM2828497_ENCLB866TLS_README.txt.gz
858 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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