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Sample GSM2828380

Query DataSets for GSM2828380

Status

Public on Oct 24, 2017

Title

ChIP-seq from transverse colon (ENCLB800CCK)

Sample type

SRA

Source name

Homo sapiens transverse colon tissue female adult (51 year)

Organism

Homo sapiens

Characteristics

antibody: EP300
tissue_type: transverse colon
biomaterial_type: tissue
biosample encode accession: ENCBS767MTN (SAMN07791204)
Sex: female
lab: Richard Myers, HAIB
age: 51 year
donor_id: ENCDO271OUW
dev stage: adult
link: ENCBS767MTN at ENCODE; https://www.encodeproject.org/ENCBS767MTN/
link: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/7b223824-1a15-4554-b9a1-88b1d9060190/@@download/attachment/84280.svs
link: data sheet; https://www.encodeproject.org/documents/40ac95fd-dcb1-4172-9163-a32fdde3a101/@@download/attachment/Encode%20Public%20IDs.pdf

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR704IJM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on transverse colon
experiment encode accession: ENCSR704IJM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR147NJH
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB800CCK

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 23, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105809

ChIP-seq from transverse colon (ENCSR704IJM)

Relations

BioSample

SAMN07791204

SRA

SRX3322694

Named Annotation

GSM2828380_ENCFF287TWL_signal_p-value_hg19.bigWig

Named Annotation

GSM2828380_ENCFF165XSM_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2828380_ENCFF280TSK_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2828380_ENCFF049ZCB_fold_change_over_control_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2828380_ENCFF018YQT_peaks_GRCh38.bigBed	10.9 Mb	(ftp)(http)	BIGBED
GSM2828380_ENCFF049AQD_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed	78.3 Kb	(ftp)(http)	BIGBED
GSM2828380_ENCFF049ZCB_fold_change_over_control_GRCh38.bigWig	870.1 Mb	(ftp)(http)	BIGWIG
GSM2828380_ENCFF052QTX_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz	822 b	(ftp)(http)	BED
GSM2828380_ENCFF079CRY_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz	1.6 Kb	(ftp)(http)	BED
GSM2828380_ENCFF165XSM_signal_p-value_GRCh38.bigWig	503.6 Mb	(ftp)(http)	BIGWIG
GSM2828380_ENCFF274HVH_peaks_hg19.bigBed	10.8 Mb	(ftp)(http)	BIGBED
GSM2828380_ENCFF280TSK_fold_change_over_control_hg19.bigWig	864.9 Mb	(ftp)(http)	BIGWIG
GSM2828380_ENCFF287TWL_signal_p-value_hg19.bigWig	503.2 Mb	(ftp)(http)	BIGWIG
GSM2828380_ENCFF363GGJ_peaks_GRCh38.bed.gz	4.1 Mb	(ftp)(http)	BED
GSM2828380_ENCFF640NTC_peaks_hg19.bed.gz	4.1 Mb	(ftp)(http)	BED
GSM2828380_ENCFF744NRV_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed	15.7 Kb	(ftp)(http)	BIGBED
GSM2828380_ENCLB800CCK_README.txt.gz	1.2 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file