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Sample GSM2828380 Query DataSets for GSM2828380
Status Public on Oct 24, 2017
Title ChIP-seq from transverse colon (ENCLB800CCK)
Sample type SRA
 
Source name Homo sapiens transverse colon tissue female adult (51 year)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: transverse colon
biomaterial_type: tissue
biosample encode accession: ENCBS767MTN (SAMN07791204)
Sex: female
lab: Richard Myers, HAIB
age: 51 year
donor_id: ENCDO271OUW
dev stage: adult
link: ENCBS767MTN at ENCODE; https://www.encodeproject.org/ENCBS767MTN/
link: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/7b223824-1a15-4554-b9a1-88b1d9060190/@@download/attachment/84280.svs
link: data sheet; https://www.encodeproject.org/documents/40ac95fd-dcb1-4172-9163-a32fdde3a101/@@download/attachment/Encode%20Public%20IDs.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR704IJM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on transverse colon
experiment encode accession: ENCSR704IJM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR147NJH
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB800CCK
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 23, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105809 ChIP-seq from transverse colon (ENCSR704IJM)
Relations
BioSample SAMN07791204
SRA SRX3322694
Named Annotation GSM2828380_ENCFF287TWL_signal_p-value_hg19.bigWig
Named Annotation GSM2828380_ENCFF165XSM_signal_p-value_GRCh38.bigWig
Named Annotation GSM2828380_ENCFF280TSK_fold_change_over_control_hg19.bigWig
Named Annotation GSM2828380_ENCFF049ZCB_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2828380_ENCFF018YQT_peaks_GRCh38.bigBed 10.9 Mb (ftp)(http) BIGBED
GSM2828380_ENCFF049AQD_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 78.3 Kb (ftp)(http) BIGBED
GSM2828380_ENCFF049ZCB_fold_change_over_control_GRCh38.bigWig 870.1 Mb (ftp)(http) BIGWIG
GSM2828380_ENCFF052QTX_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 822 b (ftp)(http) BED
GSM2828380_ENCFF079CRY_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 1.6 Kb (ftp)(http) BED
GSM2828380_ENCFF165XSM_signal_p-value_GRCh38.bigWig 503.6 Mb (ftp)(http) BIGWIG
GSM2828380_ENCFF274HVH_peaks_hg19.bigBed 10.8 Mb (ftp)(http) BIGBED
GSM2828380_ENCFF280TSK_fold_change_over_control_hg19.bigWig 864.9 Mb (ftp)(http) BIGWIG
GSM2828380_ENCFF287TWL_signal_p-value_hg19.bigWig 503.2 Mb (ftp)(http) BIGWIG
GSM2828380_ENCFF363GGJ_peaks_GRCh38.bed.gz 4.1 Mb (ftp)(http) BED
GSM2828380_ENCFF640NTC_peaks_hg19.bed.gz 4.1 Mb (ftp)(http) BED
GSM2828380_ENCFF744NRV_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 15.7 Kb (ftp)(http) BIGBED
GSM2828380_ENCLB800CCK_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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