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Sample GSM2827606

Query DataSets for GSM2827606

Status

Public on Oct 23, 2017

Title

ChIP-seq from VCaP (ENCLB904PZW)

Sample type

SRA

Source name

Homo sapiens VCaP immortalized cell line

Organism

Homo sapiens

Characteristics

antibody: H3K27ac
line: VCaP
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS316RCQ (SAMN07790925)
Sex: male
lab: Michael Snyder, Stanford
health state: prostate adenocarcinoma
age: 50 year
dev stage: adult
link: ENCBS316RCQ at ENCODE; https://www.encodeproject.org/ENCBS316RCQ/
link: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/

Extracted molecule

genomic DNA

Extraction protocol

not provided

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR597ULV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on human VCaP
experiment encode accession: ENCSR597ULV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716BTZ
encode release date: 2017-04-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB904PZW
size range: 450-650

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 21, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105760

ChIP-seq from VCaP (ENCSR597ULV)

Relations

BioSample

SAMN07790925

SRA

SRX3322680

Named Annotation

GSM2827606_ENCFF151JSA_fold_change_over_control_GRCh38.bigWig

Named Annotation

GSM2827606_ENCFF235LLT_signal_p-value_hg19.bigWig

Named Annotation

GSM2827606_ENCFF584FYC_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2827606_ENCFF649IEN_fold_change_over_control_hg19.bigWig

Supplementary file	Size	Download	File type/resource
GSM2827606_ENCFF121IAN_peaks_GRCh38.bigBed	4.6 Mb	(ftp)(http)	BIGBED
GSM2827606_ENCFF151JSA_fold_change_over_control_GRCh38.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSM2827606_ENCFF235LLT_signal_p-value_hg19.bigWig	1.2 Gb	(ftp)(http)	BIGWIG
GSM2827606_ENCFF584FYC_signal_p-value_GRCh38.bigWig	1.1 Gb	(ftp)(http)	BIGWIG
GSM2827606_ENCFF649IEN_fold_change_over_control_hg19.bigWig	1.3 Gb	(ftp)(http)	BIGWIG
GSM2827606_ENCFF884CAH_peaks_GRCh38.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2827606_ENCFF957SRR_peaks_hg19.bed.gz	1.7 Mb	(ftp)(http)	BED
GSM2827606_ENCFF999XNK_peaks_hg19.bigBed	4.6 Mb	(ftp)(http)	BIGBED
GSM2827606_ENCLB904PZW_README.txt.gz	1.7 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record