GEO Publications
Handout
NAR 2013 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM2827594
Query DataSets for GSM2827594
Status
Public on Oct 23, 2017
Title
ChIP-seq from C4-2B (ENCLB838PTL)
Sample type
SRA
Source name
Homo sapiens C4-2B immortalized cell line
Organism
Homo sapiens
Characteristics
antibody: Control
line: C4-2B
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS947VNK (SAMN07791304)
Sex: male
lab: Michael Snyder, Stanford
health state: prostate adenocarcinoma
age: 50 year
dev stage: adult
link: ENCBS947VNK at ENCODE;
https://www.encodeproject.org/ENCBS947VNK/
link: derived from ENCODE donor ENCDO000ACX;
https://www.encodeproject.org/ENCDO000ACX/
link: growth protocol;
https://www.encodeproject.org/documents/fdff4c85-6e69-48b2-ae06-d809a1d2b034/@@download/attachment/C4-2B_Cell_Culture_Farnham_150720.pdf
Extracted molecule
genomic DNA
Extraction protocol
not provided
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR585FQO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human C4-2B
experiment encode accession: ENCSR585FQO
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB838PTL
size range: 450-650
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Oct 21, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE105753
ChIP-seq from C4-2B (ENCSR585FQO)
Relations
BioSample
SAMN07791304
SRA
SRX3322666
Supplementary file
Size
Download
File type/resource
GSM2827594_ENCLB838PTL_README.txt.gz
322 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
