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Sample GSM2827525 Query DataSets for GSM2827525
Status Public on Oct 23, 2017
Title ChIP-seq from ovary (ENCLB285SPD)
Sample type SRA
 
Source name Homo sapiens ovary tissue female adult (53 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: ovary
biomaterial_type: tissue
biosample encode accession: ENCBS874ZKQ (SAMN07791259)
Sex: female
lab: Richard Myers, HAIB
age: 53 year
donor_id: ENCDO793LXB
dev stage: adult
link: ENCBS874ZKQ at ENCODE; https://www.encodeproject.org/ENCBS874ZKQ/
link: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/76117c8f-427c-46a3-83e7-06a793af0684/@@download/attachment/83379.svs
link: data sheet; https://www.encodeproject.org/documents/58b2d578-8eae-4d61-998c-ca195b68782c/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR696LQU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on female gonad
experiment encode accession: ENCSR696LQU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255HLM
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB285SPD
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 21, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105704 ChIP-seq from ovary (ENCSR696LQU)
Relations
BioSample SAMN07791259
SRA SRX3322587
Named Annotation GSM2827525_ENCFF991KEG_signal_p-value_GRCh38.bigWig
Named Annotation GSM2827525_ENCFF394GAG_signal_p-value_hg19.bigWig
Named Annotation GSM2827525_ENCFF707TYG_fold_change_over_control_hg19.bigWig
Named Annotation GSM2827525_ENCFF115AYZ_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2827525_ENCFF115AYZ_fold_change_over_control_GRCh38.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSM2827525_ENCFF294GHG_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 268.1 Kb (ftp)(http) BIGBED
GSM2827525_ENCFF353CLB_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 108.3 Kb (ftp)(http) BED
GSM2827525_ENCFF394GAG_signal_p-value_hg19.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSM2827525_ENCFF434UOV_peaks_hg19.bigBed 11.1 Mb (ftp)(http) BIGBED
GSM2827525_ENCFF565FJL_peaks_GRCh38.bed.gz 5.9 Mb (ftp)(http) BED
GSM2827525_ENCFF707TYG_fold_change_over_control_hg19.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSM2827525_ENCFF712KAB_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 266.0 Kb (ftp)(http) BIGBED
GSM2827525_ENCFF761ORT_peaks_hg19.bed.gz 5.9 Mb (ftp)(http) BED
GSM2827525_ENCFF779OXM_peaks_GRCh38.bigBed 11.2 Mb (ftp)(http) BIGBED
GSM2827525_ENCFF934XEQ_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 108.1 Kb (ftp)(http) BED
GSM2827525_ENCFF991KEG_signal_p-value_GRCh38.bigWig 1.2 Gb (ftp)(http) BIGWIG
GSM2827525_ENCLB285SPD_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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