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Sample GSM2827464

Query DataSets for GSM2827464

Status

Public on Oct 23, 2017

Title

ChIP-seq from vagina (ENCLB400VDX)

Sample type

SRA

Source name

Homo sapiens vagina tissue female adult (53 years)

Organism

Homo sapiens

Characteristics

antibody: Control
tissue_type: vagina
biomaterial_type: tissue
biosample encode accession: ENCBS698MLA (SAMN07791152)
Sex: female
lab: Richard Myers, HAIB
age: 53 year
donor_id: ENCDO793LXB
dev stage: adult
link: ENCBS698MLA at ENCODE; https://www.encodeproject.org/ENCBS698MLA/
link: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/
link: data sheet; https://www.encodeproject.org/documents/58b2d578-8eae-4d61-998c-ca195b68782c/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image; https://www.encodeproject.org/documents/4f67ef38-4ded-41cb-b456-56c2bc46dc9d/@@download/attachment/83378.svs

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR466CAA/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Sun Oct 30 2016 23:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR466CAA
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB400VDX

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 21, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105664

ChIP-seq from vagina (ENCSR466CAA)

Relations

BioSample

SAMN07791152

SRA

SRX3322552

Supplementary file	Size	Download	File type/resource
GSM2827464_ENCLB400VDX_README.txt.gz	321 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file