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Sample GSM2827407 Query DataSets for GSM2827407
Status Public on Oct 23, 2017
Title ChIP-seq from 22Rv1 (ENCLB149SBT)
Sample type SRA
 
Source name Homo sapiens 22Rv1 immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: 22Rv1
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS822DIG (SAMN07791225)
Sex: not collected
lab: Michael Snyder, Stanford
health state: carcinoma (prostate)
age: unknown
dev stage: unknown
link: ENCBS822DIG at ENCODE; https://www.encodeproject.org/ENCBS822DIG/
link: derived from ENCODE donor ENCDO719HIY; https://www.encodeproject.org/ENCDO719HIY/
link: growth protocol; https://www.encodeproject.org/documents/5cb20f3d-c221-4455-9537-9df000451381/@@download/attachment/22Rv1_Cell_Culture_Farnham_150923.pdf
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR391NPE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on human 22Rv1
experiment encode accession: ENCSR391NPE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB149SBT
size range: 450-650
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 21, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105627 ChIP-seq from 22Rv1 (ENCSR391NPE)
Relations
BioSample SAMN07791225
SRA SRX3322469
Named Annotation GSM2827407_ENCFF206KON_signal_p-value_GRCh38.bigWig
Named Annotation GSM2827407_ENCFF942BBN_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2827407_ENCFF286BKT_fold_change_over_control_hg19.bigWig
Named Annotation GSM2827407_ENCFF321IUS_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2827407_ENCFF049MML_peaks_GRCh38.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2827407_ENCFF206KON_signal_p-value_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2827407_ENCFF286BKT_fold_change_over_control_hg19.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2827407_ENCFF321IUS_signal_p-value_hg19.bigWig 1.3 Gb (ftp)(http) BIGWIG
GSM2827407_ENCFF375ZKU_peaks_hg19.bed.gz 1.1 Mb (ftp)(http) BED
GSM2827407_ENCFF385UPQ_peaks_GRCh38.bed.gz 1.1 Mb (ftp)(http) BED
GSM2827407_ENCFF498TYS_peaks_hg19.bigBed 3.1 Mb (ftp)(http) BIGBED
GSM2827407_ENCFF942BBN_fold_change_over_control_GRCh38.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM2827407_ENCLB149SBT_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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