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Sample GSM2827390

Query DataSets for GSM2827390

Status

Public on Oct 23, 2017

Title

ChIP-seq from esophagus muscularis mucosa (ENCLB887LFZ)

Sample type

SRA

Source name

Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)

Organism

Homo sapiens

Characteristics

antibody: Control
tissue_type: esophagus muscularis mucosa
biomaterial_type: tissue
biosample encode accession: ENCBS735VKK (SAMN07791178)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS735VKK at ENCODE; https://www.encodeproject.org/ENCBS735VKK/
link: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
link: data sheet; https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image; https://www.encodeproject.org/documents/81de566a-87a0-4f4d-8614-0767dcb0766c/@@download/attachment/82353.svs

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR452KMJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 12 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR452KMJ
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB887LFZ

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 21, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105615

ChIP-seq from esophagus muscularis mucosa (ENCSR452KMJ)

Relations

BioSample

SAMN07791178

SRA

SRX3322450

Supplementary file	Size	Download	File type/resource
GSM2827390_ENCLB887LFZ_README.txt.gz	320 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file