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Sample GSM2827368 Query DataSets for GSM2827368
Status Public on Oct 23, 2017
Title Hi-C from A549 (ENCLB571HTP)
Sample type SRA
 
Source name Homo sapiens A549 immortalized cell line
Organism Homo sapiens
Characteristics line: A549
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS009OIC (SAMN07790743)
Sex: male
lab: John Stamatoyannopoulos, UW
age: 58 year
dev stage: adult
link: ENCBS009OIC at ENCODE; https://www.encodeproject.org/ENCBS009OIC/
link: derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/
link: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy Hi-C
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR444WCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on A549
experiment encode accession: ENCSR444WCZ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB571HTP
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 21, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE105600 Hi-C from A549 (ENCSR444WCZ)
Relations
BioSample SAMN07790743
SRA SRX3322441

Supplementary file Size Download File type/resource
GSM2827368_ENCLB571HTP_README.txt.gz 955 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

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