GEO Publications
Handout
NAR 2013 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM2827361
Query DataSets for GSM2827361
Status
Public on Oct 23, 2017
Title
ChIP-seq from omental fat pad (ENCLB672BRM)
Sample type
SRA
Source name
Homo sapiens omental fat pad tissue male adult (54 years)
Organism
Homo sapiens
Characteristics
antibody: Control
tissue_type: omental fat pad
biomaterial_type: tissue
biosample encode accession: ENCBS549WYP (SAMN07791065)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS549WYP at ENCODE;
https://www.encodeproject.org/ENCBS549WYP/
link: derived from ENCODE donor ENCDO451RUA;
https://www.encodeproject.org/ENCDO451RUA/
link: data sheet;
https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
link: high resolution pathology slide image;
https://www.encodeproject.org/documents/6fc7fb1a-fb8d-40a9-9e2d-88c59605f3f9/@@download/attachment/82362.svs
Extracted molecule
genomic DNA
Extraction protocol
extraction method: see document
Library strategy
ChIP-Seq
Library source
genomic
Library selection
ChIP
Instrument model
Illumina HiSeq 2000
Description
https://www.encodeproject.org/experiments/ENCSR377VHO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Aug 24 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR377VHO
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB672BRM
Data processing
See GSM*_README.txt supplementary file linked below
Submission date
Oct 20, 2017
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL11154
Series (1)
GSE105596
ChIP-seq from omental fat pad (ENCSR377VHO)
Relations
BioSample
SAMN07791065
SRA
SRX3322430
Supplementary file
Size
Download
File type/resource
GSM2827361_ENCLB672BRM_README.txt.gz
320 b
(ftp)
(http)
TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
