|
| Status |
Public on Oct 23, 2017 |
| Title |
ChIP-seq from HepG2 (ENCLB799DHF) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens HepG2 immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
antibody: BRD4
line: HepG2
biomaterial_type: immortalized cell line
description: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.
biosample encode accession: ENCBS467HWM (SAMN06464417)
dev stage: child
Sex: male
age: 15 year
health state: hepatocellular carcinoma
passage number: 10
lab: Bradley Bernstein, Broad
link: ENCBS467HWM at ENCODE; https://www.encodeproject.org/ENCBS467HWM/
link: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR514EOE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR514EOE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB799DHF
size range: 200-600
nucleic acid starting quantity: 1.32
nucleic acid starting quantity units: ng
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Oct 20, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (1) |
|
| Relations |
| BioSample |
SAMN06464417 |
| SRA |
SRX3322390 |
| Named Annotation |
GSM2827351_ENCFF208YEC_fold_change_over_control_GRCh38.bigWig |
| Named Annotation |
GSM2827351_ENCFF638QKF_fold_change_over_control_hg19.bigWig |
| Named Annotation |
GSM2827351_ENCFF343QET_signal_p-value_hg19.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM2827351_ENCFF048ORT_peaks_hg19.bed.gz |
6.4 Mb |
(ftp)(http) |
BED |
| GSM2827351_ENCFF181QOQ_peaks_GRCh38.bed.gz |
6.4 Mb |
(ftp)(http) |
BED |
| GSM2827351_ENCFF208YEC_fold_change_over_control_GRCh38.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
| GSM2827351_ENCFF343QET_signal_p-value_hg19.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
| GSM2827351_ENCFF487SGX_peaks_hg19.bigBed |
12.8 Mb |
(ftp)(http) |
BIGBED |
| GSM2827351_ENCFF587CMS_signal_p-value_GRCh38.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
| GSM2827351_ENCFF638QKF_fold_change_over_control_hg19.bigWig |
1.1 Gb |
(ftp)(http) |
BIGWIG |
| GSM2827351_ENCFF986NQA_peaks_GRCh38.bigBed |
12.8 Mb |
(ftp)(http) |
BIGBED |
| GSM2827351_ENCLB799DHF_README.txt.gz |
2.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
