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Sample GSM2827351 Query DataSets for GSM2827351
Status Public on Oct 23, 2017
Title ChIP-seq from HepG2 (ENCLB799DHF)
Sample type SRA
Source name Homo sapiens HepG2 immortalized cell line
Organism Homo sapiens
Characteristics antibody: BRD4
line: HepG2
biomaterial_type: immortalized cell line
description: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.
biosample encode accession: ENCBS467HWM (SAMN06464417)
dev stage: child
Sex: male
age: 15 year
health state: hepatocellular carcinoma
passage number: 10
lab: Bradley Bernstein, Broad
link: ENCBS467HWM at ENCODE;
link: Derived from ENCODE donor ENCDO000AAC;
Extracted molecule genomic DNA
Extraction protocol not provided
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
biological replicate number: 1
technical replicate number: 1
experiment encode accession: ENCSR514EOE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR055XHN
encode release date: 2017-08-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB799DHF
size range: 200-600
nucleic acid starting quantity: 1.32
nucleic acid starting quantity units: ng
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL16791
Series (1)
GSE105588 ChIP-seq from HepG2 (ENCSR514EOE)
BioSample SAMN06464417
SRA SRX3322390
Named Annotation GSM2827351_ENCFF208YEC_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2827351_ENCFF638QKF_fold_change_over_control_hg19.bigWig
Named Annotation GSM2827351_ENCFF343QET_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2827351_ENCFF048ORT_peaks_hg19.bed.gz 6.4 Mb (ftp)(http) BED
GSM2827351_ENCFF181QOQ_peaks_GRCh38.bed.gz 6.4 Mb (ftp)(http) BED
GSM2827351_ENCFF208YEC_fold_change_over_control_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2827351_ENCFF343QET_signal_p-value_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2827351_ENCFF487SGX_peaks_hg19.bigBed 12.8 Mb (ftp)(http) BIGBED
GSM2827351_ENCFF587CMS_signal_p-value_GRCh38.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2827351_ENCFF638QKF_fold_change_over_control_hg19.bigWig 1.1 Gb (ftp)(http) BIGWIG
GSM2827351_ENCFF986NQA_peaks_GRCh38.bigBed 12.8 Mb (ftp)(http) BIGBED
GSM2827351_ENCLB799DHF_README.txt.gz 2.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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