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Sample GSM2827322

Query DataSets for GSM2827322

Status

Public on Oct 23, 2017

Title

ChIP-seq from sigmoid colon (ENCLB751RUR)

Sample type

SRA

Source name

Homo sapiens sigmoid colon tissue female adult (51 year)

Organism

Homo sapiens

Characteristics

antibody: Control
tissue_type: sigmoid colon
biomaterial_type: tissue
biosample encode accession: ENCBS538MFJ (SAMN07791053)
Sex: female
lab: Richard Myers, HAIB
age: 51 year
donor_id: ENCDO271OUW
dev stage: adult
link: ENCBS538MFJ at ENCODE; https://www.encodeproject.org/ENCBS538MFJ/
link: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/76821021-0729-4f4a-8283-353359136254/@@download/attachment/84281.svs
link: data sheet; https://www.encodeproject.org/documents/40ac95fd-dcb1-4172-9163-a32fdde3a101/@@download/attachment/Encode%20Public%20IDs.pdf

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR509RYG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 19 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR509RYG
assay title: ChIP-seq
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB751RUR

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 20, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105571

ChIP-seq from sigmoid colon (ENCSR509RYG)

Relations

BioSample

SAMN07791053

SRA

SRX3322401

Supplementary file	Size	Download	File type/resource
GSM2827322_ENCLB751RUR_README.txt.gz	324 b	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file