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Sample GSM2827313 Query DataSets for GSM2827313
Status Public on Oct 23, 2017
Title Hi-C from Panc1 (ENCLB951HSJ)
Sample type SRA
 
Source name Homo sapiens Panc1 immortalized cell line
Organism Homo sapiens
Characteristics line: Panc1
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS556WYR (SAMN07791071)
Sex: male
lab: John Stamatoyannopoulos, UW
health state: pancreatic carcinoma
age: 56 year
dev stage: unknown
link: ENCBS556WYR at ENCODE; https://www.encodeproject.org/ENCBS556WYR/
link: derived from ENCODE donor ENCDO000ABB; https://www.encodeproject.org/ENCDO000ABB/
link: ENCODE dbxrefs Cellosaurus CVCL_0480; http://web.expasy.org/cellosaurus/CVCL_0480
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy Hi-C
Library source genomic
Library selection other
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR440CTR/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on Panc1
experiment encode accession: ENCSR440CTR
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB951HSJ
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105566 Hi-C from Panc1 (ENCSR440CTR)
Relations
BioSample SAMN07791071
SRA SRX3322367

Supplementary file Size Download File type/resource
GSM2827313_ENCLB951HSJ_README.txt.gz 959 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data is available on Series record

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