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Sample GSM2827302 Query DataSets for GSM2827302
Status Public on Oct 23, 2017
Title ChIP-seq from breast epithelium (ENCLB712WWN)
Sample type SRA
 
Source name Homo sapiens breast epithelium tissue male adult (37 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: breast epithelium
biomaterial_type: tissue
biosample encode accession: ENCBS166EJL (SAMN07790832)
Sex: male
lab: Richard Myers, HAIB
age: 37 year
donor_id: ENCDO845WKR
dev stage: adult
link: ENCBS166EJL at ENCODE; https://www.encodeproject.org/ENCBS166EJL/
link: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
link: general protocol; https://www.encodeproject.org/documents/a3ee0bcf-48e3-4173-a23e-28a370090f00/@@download/attachment/ENCDO845WKR_collection_times.pdf
link: data sheet; https://www.encodeproject.org/documents/c530ba5c-4343-49bc-898b-5579c287a67e/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR346DKN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on mammary gland
experiment encode accession: ENCSR346DKN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR774ONS
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB712WWN
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105559 ChIP-seq from breast epithelium (ENCSR346DKN)
Relations
BioSample SAMN07790832
SRA SRX3322356
Named Annotation GSM2827302_ENCFF381CZQ_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2827302_ENCFF364KDX_fold_change_over_control_hg19.bigWig
Named Annotation GSM2827302_ENCFF826OPR_signal_p-value_hg19.bigWig
Named Annotation GSM2827302_ENCFF441IFJ_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2827302_ENCFF068SUB_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 61.4 Kb (ftp)(http) BIGBED
GSM2827302_ENCFF079ZWQ_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 4.2 Kb (ftp)(http) BED
GSM2827302_ENCFF089JPG_peaks_hg19.bigBed 10.1 Mb (ftp)(http) BIGBED
GSM2827302_ENCFF359IIT_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 56.8 Kb (ftp)(http) BIGBED
GSM2827302_ENCFF364KDX_fold_change_over_control_hg19.bigWig 828.5 Mb (ftp)(http) BIGWIG
GSM2827302_ENCFF381CZQ_fold_change_over_control_GRCh38.bigWig 838.5 Mb (ftp)(http) BIGWIG
GSM2827302_ENCFF441IFJ_signal_p-value_GRCh38.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2827302_ENCFF756SCW_peaks_GRCh38.bigBed 10.3 Mb (ftp)(http) BIGBED
GSM2827302_ENCFF757KZD_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 2.7 Kb (ftp)(http) BED
GSM2827302_ENCFF777YLJ_peaks_GRCh38.bed.gz 6.5 Mb (ftp)(http) BED
GSM2827302_ENCFF826OPR_signal_p-value_hg19.bigWig 902.5 Mb (ftp)(http) BIGWIG
GSM2827302_ENCFF874MIZ_peaks_hg19.bed.gz 6.3 Mb (ftp)(http) BED
GSM2827302_ENCLB712WWN_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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