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Sample GSM2825967 Query DataSets for GSM2825967
Status Public on Oct 20, 2017
Title ChIP-seq from upper lobe of left lung (ENCLB572PFM)
Sample type SRA
 
Source name Homo sapiens upper lobe of left lung tissue male adult (54 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: upper lobe of left lung
biomaterial_type: tissue
biosample encode accession: ENCBS708WNV (SAMN07791160)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS708WNV at ENCODE; https://www.encodeproject.org/ENCBS708WNV/
link: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/632f8c04-c6ae-4a33-b452-2fcbeff100f3/@@download/attachment/82358.svs
link: data sheet; https://www.encodeproject.org/documents/f1bc1a32-57c3-4eb7-a440-550aef6be681/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR290QBB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on upper lobe of left lung
experiment encode accession: ENCSR290QBB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR949XFR
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB572PFM
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105433 ChIP-seq from upper lobe of left lung (ENCSR290QBB)
Relations
BioSample SAMN07791160
SRA SRX3322177
Named Annotation GSM2825967_ENCFF648GGY_signal_p-value_hg19.bigWig
Named Annotation GSM2825967_ENCFF417NVH_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825967_ENCFF694TXJ_signal_p-value_GRCh38.bigWig
Named Annotation GSM2825967_ENCFF621LMW_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2825967_ENCFF131QGF_peaks_hg19.bigBed 10.8 Mb (ftp)(http) BIGBED
GSM2825967_ENCFF200AXJ_peaks_hg19.bed.gz 4.2 Mb (ftp)(http) BED
GSM2825967_ENCFF294RNI_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 64.1 Kb (ftp)(http) BED
GSM2825967_ENCFF367FSN_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 163.8 Kb (ftp)(http) BIGBED
GSM2825967_ENCFF417FTY_peaks_GRCh38.bigBed 10.8 Mb (ftp)(http) BIGBED
GSM2825967_ENCFF417NVH_fold_change_over_control_hg19.bigWig 793.8 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF548AAT_peaks_GRCh38.bed.gz 4.2 Mb (ftp)(http) BED
GSM2825967_ENCFF621LMW_fold_change_over_control_GRCh38.bigWig 794.0 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF648GGY_signal_p-value_hg19.bigWig 825.8 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF676WYA_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 62.4 Kb (ftp)(http) BED
GSM2825967_ENCFF694TXJ_signal_p-value_GRCh38.bigWig 827.3 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF984LXP_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 164.8 Kb (ftp)(http) BIGBED
GSM2825967_ENCLB572PFM_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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