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Sample GSM2825967 Query DataSets for GSM2825967
Status Public on Oct 20, 2017
Title ChIP-seq from upper lobe of left lung (ENCLB572PFM)
Sample type SRA
Source name Homo sapiens upper lobe of left lung tissue male adult (54 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: upper lobe of left lung
biomaterial_type: tissue
biosample encode accession: ENCBS708WNV (SAMN07791160)
Sex: male
lab: Richard Myers, HAIB
age: 54 year
donor_id: ENCDO451RUA
dev stage: adult
link: ENCBS708WNV at ENCODE;
link: derived from ENCODE donor ENCDO451RUA;
link: high resolution pathology slide image;
link: data sheet;
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on upper lobe of left lung
experiment encode accession: ENCSR290QBB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR949XFR
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB572PFM
Data processing See GSM*_README.txt supplementary file linked below
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE105433 ChIP-seq from upper lobe of left lung (ENCSR290QBB)
BioSample SAMN07791160
SRA SRX3322177
Named Annotation GSM2825967_ENCFF648GGY_signal_p-value_hg19.bigWig
Named Annotation GSM2825967_ENCFF417NVH_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825967_ENCFF694TXJ_signal_p-value_GRCh38.bigWig
Named Annotation GSM2825967_ENCFF621LMW_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2825967_ENCFF131QGF_peaks_hg19.bigBed 10.8 Mb (ftp)(http) BIGBED
GSM2825967_ENCFF200AXJ_peaks_hg19.bed.gz 4.2 Mb (ftp)(http) BED
GSM2825967_ENCFF294RNI_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 64.1 Kb (ftp)(http) BED
GSM2825967_ENCFF367FSN_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 163.8 Kb (ftp)(http) BIGBED
GSM2825967_ENCFF417FTY_peaks_GRCh38.bigBed 10.8 Mb (ftp)(http) BIGBED
GSM2825967_ENCFF417NVH_fold_change_over_control_hg19.bigWig 793.8 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF548AAT_peaks_GRCh38.bed.gz 4.2 Mb (ftp)(http) BED
GSM2825967_ENCFF621LMW_fold_change_over_control_GRCh38.bigWig 794.0 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF648GGY_signal_p-value_hg19.bigWig 825.8 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF676WYA_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 62.4 Kb (ftp)(http) BED
GSM2825967_ENCFF694TXJ_signal_p-value_GRCh38.bigWig 827.3 Mb (ftp)(http) BIGWIG
GSM2825967_ENCFF984LXP_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 164.8 Kb (ftp)(http) BIGBED
GSM2825967_ENCLB572PFM_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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