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Sample GSM2825930 Query DataSets for GSM2825930
Status Public on Oct 20, 2017
Title ChIP-seq from C4-2B (ENCLB205HAN)
Sample type SRA
 
Source name Homo sapiens C4-2B immortalized cell line
Organism Homo sapiens
Characteristics antibody: H3K27ac
line: C4-2B
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS109FVF (SAMN07790805)
Sex: male
lab: Michael Snyder, Stanford
health state: prostate adenocarcinoma
age: 50 year
dev stage: adult
link: ENCBS109FVF at ENCODE; https://www.encodeproject.org/ENCBS109FVF/
link: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/
link: growth protocol; https://www.encodeproject.org/documents/fdff4c85-6e69-48b2-ae06-d809a1d2b034/@@download/attachment/C4-2B_Cell_Culture_Farnham_150720.pdf
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR279KIX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on human C4-2B
experiment encode accession: ENCSR279KIX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR585FQO
encode release date: 2017-03-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB205HAN
size range: 450-650
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105424 ChIP-seq from C4-2B (ENCSR279KIX)
Relations
BioSample SAMN07790805
SRA SRX3322164
Named Annotation GSM2825930_ENCFF738QFW_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825930_ENCFF801CPD_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2825930_ENCFF128WSU_signal_p-value_hg19.bigWig
Named Annotation GSM2825930_ENCFF968OWI_signal_p-value_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2825930_ENCFF128WSU_signal_p-value_hg19.bigWig 907.5 Mb (ftp)(http) BIGWIG
GSM2825930_ENCFF278JRI_peaks_GRCh38.bigBed 3.8 Mb (ftp)(http) BIGBED
GSM2825930_ENCFF484QKH_peaks_hg19.bigBed 3.8 Mb (ftp)(http) BIGBED
GSM2825930_ENCFF569JKC_peaks_hg19.bed.gz 1.4 Mb (ftp)(http) BED
GSM2825930_ENCFF738QFW_fold_change_over_control_hg19.bigWig 929.4 Mb (ftp)(http) BIGWIG
GSM2825930_ENCFF773ATA_peaks_GRCh38.bed.gz 1.4 Mb (ftp)(http) BED
GSM2825930_ENCFF801CPD_fold_change_over_control_GRCh38.bigWig 932.1 Mb (ftp)(http) BIGWIG
GSM2825930_ENCFF968OWI_signal_p-value_GRCh38.bigWig 1.0 Gb (ftp)(http) BIGWIG
GSM2825930_ENCLB205HAN_README.txt.gz 1.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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