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Sample GSM2825575 Query DataSets for GSM2825575
Status Public on Oct 20, 2017
Title ChIP-seq from sigmoid colon (ENCLB160EUD)
Sample type SRA
 
Source name Homo sapiens sigmoid colon tissue female adult (51 year)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: sigmoid colon
biomaterial_type: tissue
biosample encode accession: ENCBS538MFJ (SAMN07791053)
Sex: female
lab: Richard Myers, HAIB
age: 51 year
donor_id: ENCDO271OUW
dev stage: adult
link: ENCBS538MFJ at ENCODE; https://www.encodeproject.org/ENCBS538MFJ/
link: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/
link: high resolution pathology slide image; https://www.encodeproject.org/documents/76821021-0729-4f4a-8283-353359136254/@@download/attachment/84281.svs
link: data sheet; https://www.encodeproject.org/documents/40ac95fd-dcb1-4172-9163-a32fdde3a101/@@download/attachment/Encode%20Public%20IDs.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR244ZAO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on sigmoid colon
experiment encode accession: ENCSR244ZAO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR509RYG
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB160EUD
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 20, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105384 ChIP-seq from sigmoid colon (ENCSR244ZAO)
Relations
BioSample SAMN07791053
SRA SRX3322106
Named Annotation GSM2825575_ENCFF033TSQ_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825575_ENCFF974FVZ_signal_p-value_hg19.bigWig
Named Annotation GSM2825575_ENCFF609GTJ_signal_p-value_GRCh38.bigWig
Named Annotation GSM2825575_ENCFF410UFX_fold_change_over_control_GRCh38.bigWig

Supplementary file Size Download File type/resource
GSM2825575_ENCFF033TSQ_fold_change_over_control_hg19.bigWig 2.1 Gb (ftp)(http) BIGWIG
GSM2825575_ENCFF161LND_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 554.9 Kb (ftp)(http) BIGBED
GSM2825575_ENCFF231LOU_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 288.4 Kb (ftp)(http) BED
GSM2825575_ENCFF410UFX_fold_change_over_control_GRCh38.bigWig 2.1 Gb (ftp)(http) BIGWIG
GSM2825575_ENCFF413PSO_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 551.4 Kb (ftp)(http) BIGBED
GSM2825575_ENCFF581DTH_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 292.1 Kb (ftp)(http) BED
GSM2825575_ENCFF609GTJ_signal_p-value_GRCh38.bigWig 2.2 Gb (ftp)(http) BIGWIG
GSM2825575_ENCFF651APA_peaks_hg19.bed.gz 6.6 Mb (ftp)(http) BED
GSM2825575_ENCFF733JNB_peaks_GRCh38.bed.gz 6.6 Mb (ftp)(http) BED
GSM2825575_ENCFF919WYW_peaks_hg19.bigBed 11.3 Mb (ftp)(http) BIGBED
GSM2825575_ENCFF973VAM_peaks_GRCh38.bigBed 11.3 Mb (ftp)(http) BIGBED
GSM2825575_ENCFF974FVZ_signal_p-value_hg19.bigWig 2.0 Gb (ftp)(http) BIGWIG
GSM2825575_ENCLB160EUD_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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