|
| Status |
Public on Oct 20, 2017 |
| Title |
Hi-C from HepG2 (ENCLB022KPF) |
| Sample type |
SRA |
| |
|
| Source name |
Homo sapiens HepG2 immortalized cell line
|
| Organism |
Homo sapiens |
| Characteristics |
line: HepG2
biomaterial_type: immortalized cell line
biosample encode accession: ENCBS061GMD (SAMN07790774)
Sex: male
lab: John Stamatoyannopoulos, UW
health state: hepatocellular carcinoma
age: 15 year
dev stage: child
link: ENCBS061GMD at ENCODE; https://www.encodeproject.org/ENCBS061GMD/
link: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
Hi-C |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR194SRI/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on HepG2
experiment encode accession: ENCSR194SRI
assay title: Hi-C
encode release date: 2017-09-28
lab: Job Dekker, UMass
library encode accession: ENCLB022KPF
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Oct 20, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
|
| Relations |
| BioSample |
SAMN07790774 |
| SRA |
SRX3322101 |
