GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM2825534

Query DataSets for GSM2825534

Status

Public on Oct 20, 2017

Title

ChIP-seq from subcutaneous adipose tissue (ENCLB805PVL)

Sample type

SRA

Source name

Homo sapiens subcutaneous adipose tissue male adult (37 years)

Organism

Homo sapiens

Characteristics

antibody: EP300
tissue_type: subcutaneous adipose tissue
biomaterial_type: tissue
biosample encode accession: ENCBS096VAL (SAMN07790794)
Sex: male
lab: Richard Myers, HAIB
age: 37 year
donor_id: ENCDO845WKR
dev stage: adult
link: ENCBS096VAL at ENCODE; https://www.encodeproject.org/ENCBS096VAL/
link: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
link: general protocol; https://www.encodeproject.org/documents/a3ee0bcf-48e3-4173-a23e-28a370090f00/@@download/attachment/ENCDO845WKR_collection_times.pdf
link: data sheet; https://www.encodeproject.org/documents/c530ba5c-4343-49bc-898b-5579c287a67e/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf

Extracted molecule

genomic DNA

Extraction protocol

extraction method: see document

Library strategy

ChIP-Seq

Library source

genomic

Library selection

ChIP

Instrument model

Illumina HiSeq 2000

Description

https://www.encodeproject.org/experiments/ENCSR176BAH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue
experiment encode accession: ENCSR176BAH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR622ZDY
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB805PVL

Data processing

See GSM*_README.txt supplementary file linked below

Submission date

Oct 20, 2017

Last update date

May 15, 2019

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platform ID

GPL11154

Series (1)

GSE105359

ChIP-seq from subcutaneous adipose tissue (ENCSR176BAH)

Relations

BioSample

SAMN07790794

SRA

SRX3322060

Named Annotation

GSM2825534_ENCFF627PIV_signal_p-value_GRCh38.bigWig

Named Annotation

GSM2825534_ENCFF610UUP_fold_change_over_control_hg19.bigWig

Named Annotation

GSM2825534_ENCFF426NMH_signal_p-value_hg19.bigWig

Named Annotation

GSM2825534_ENCFF331CAB_fold_change_over_control_GRCh38.bigWig

Supplementary file	Size	Download	File type/resource
GSM2825534_ENCFF020SME_peaks_GRCh38.bigBed	11.1 Mb	(ftp)(http)	BIGBED
GSM2825534_ENCFF085MWN_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz	1.8 Kb	(ftp)(http)	BED
GSM2825534_ENCFF129BFA_peaks_GRCh38.bed.gz	6.5 Mb	(ftp)(http)	BED
GSM2825534_ENCFF184MII_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed	73.3 Kb	(ftp)(http)	BIGBED
GSM2825534_ENCFF269VDY_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz	2.4 Kb	(ftp)(http)	BED
GSM2825534_ENCFF279ZHM_peaks_hg19.bigBed	11.1 Mb	(ftp)(http)	BIGBED
GSM2825534_ENCFF331CAB_fold_change_over_control_GRCh38.bigWig	1.7 Gb	(ftp)(http)	BIGWIG
GSM2825534_ENCFF426NMH_signal_p-value_hg19.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSM2825534_ENCFF551NXL_peaks_hg19.bed.gz	6.5 Mb	(ftp)(http)	BED
GSM2825534_ENCFF555CQW_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed	78.5 Kb	(ftp)(http)	BIGBED
GSM2825534_ENCFF610UUP_fold_change_over_control_hg19.bigWig	1.7 Gb	(ftp)(http)	BIGWIG
GSM2825534_ENCFF627PIV_signal_p-value_GRCh38.bigWig	1.8 Gb	(ftp)(http)	BIGWIG
GSM2825534_ENCLB805PVL_README.txt.gz	1.2 Kb	(ftp)(http)	TXT
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file