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Sample GSM2825526 Query DataSets for GSM2825526
Status Public on Oct 20, 2017
Title ChIP-seq from stomach (ENCLB351NXB)
Sample type SRA
 
Source name Homo sapiens stomach tissue male adult (37 years)
Organism Homo sapiens
Characteristics antibody: EP300
tissue_type: stomach
biomaterial_type: tissue
biosample encode accession: ENCBS555DNU (SAMN07791068)
Sex: male
lab: Richard Myers, HAIB
age: 37 year
donor_id: ENCDO845WKR
dev stage: adult
link: ENCBS555DNU at ENCODE; https://www.encodeproject.org/ENCBS555DNU/
link: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/
link: general protocol; https://www.encodeproject.org/documents/a3ee0bcf-48e3-4173-a23e-28a370090f00/@@download/attachment/ENCDO845WKR_collection_times.pdf
link: data sheet; https://www.encodeproject.org/documents/c530ba5c-4343-49bc-898b-5579c287a67e/@@download/attachment/image%20to%20tissue%20mapping%20public.pdf
Extracted molecule genomic DNA
Extraction protocol extraction method: see document
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Description https://www.encodeproject.org/experiments/ENCSR228ZPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on stomach
experiment encode accession: ENCSR228ZPZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR637MGJ
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB351NXB
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 19, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE105354 ChIP-seq from stomach (ENCSR228ZPZ)
Relations
BioSample SAMN07791068
SRA SRX3322054
Named Annotation GSM2825526_ENCFF008LVL_fold_change_over_control_hg19.bigWig
Named Annotation GSM2825526_ENCFF106FOU_signal_p-value_GRCh38.bigWig
Named Annotation GSM2825526_ENCFF353YJE_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2825526_ENCFF426ZVM_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2825526_ENCFF006OGD_peaks_GRCh38.bigBed 11.3 Mb (ftp)(http) BIGBED
GSM2825526_ENCFF008LVL_fold_change_over_control_hg19.bigWig 1.7 Gb (ftp)(http) BIGWIG
GSM2825526_ENCFF106FOU_signal_p-value_GRCh38.bigWig 1.7 Gb (ftp)(http) BIGWIG
GSM2825526_ENCFF220JFI_peaks_GRCh38.bed.gz 5.9 Mb (ftp)(http) BED
GSM2825526_ENCFF243XHX_pseudoreplicated_idr_thresholded_peaks_hg19.bed.gz 1.6 Kb (ftp)(http) BED
GSM2825526_ENCFF353YJE_fold_change_over_control_GRCh38.bigWig 1.7 Gb (ftp)(http) BIGWIG
GSM2825526_ENCFF403WRV_peaks_hg19.bigBed 11.3 Mb (ftp)(http) BIGBED
GSM2825526_ENCFF426ZVM_signal_p-value_hg19.bigWig 1.6 Gb (ftp)(http) BIGWIG
GSM2825526_ENCFF434LHU_pseudoreplicated_idr_thresholded_peaks_GRCh38.bigBed 25.1 Kb (ftp)(http) BIGBED
GSM2825526_ENCFF479QKT_pseudoreplicated_idr_thresholded_peaks_hg19.bigBed 17.3 Kb (ftp)(http) BIGBED
GSM2825526_ENCFF730SMH_peaks_hg19.bed.gz 5.9 Mb (ftp)(http) BED
GSM2825526_ENCFF904COM_pseudoreplicated_idr_thresholded_peaks_GRCh38.bed.gz 1.7 Kb (ftp)(http) BED
GSM2825526_ENCLB351NXB_README.txt.gz 1.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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